[petsc-users] ccgraph.c error

Rongliang Chen rongliang.chan at gmail.com
Sun Nov 27 14:04:57 CST 2011 

Hi Jed,

Thank you for your reply.
I have no idea if I have passed a invalid graph to Metis.
This error just appeared when I run my code with some number of processors.
I run my code with the debug version of PETSc and I got the following error
message.

Best,
Rongliang

------------------------------------------------------
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 107 106 107 0
[313]PETSC ERROR:
------------------------------------------------------------------------
[313]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[313]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[313]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[313]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[313]PETSC ERROR: likely location of problem given in stack below
[313]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 107 106 107 0
[313]PETSC ERROR: Note: The EXACT line numbers in the stack are not
available,
[313]PETSC ERROR:       INSTEAD the line number of the start of the function
[313]PETSC ERROR:       is given.
[313]PETSC ERROR: [313] MatLUFactorNumeric_SuperLU_DIST line 280
src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
[313]PETSC ERROR: [313] MatLUFactorNumeric line 2864
src/mat/interface/matrix.c
[313]PETSC ERROR: [313] PCApply line 373 src/ksp/pc/interface/precon.c
[313]PETSC ERROR: [313] FGMREScycle line 119
src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[313]PETSC ERROR: [313] KSPSolve_FGMRES line 282
src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[313]PETSC ERROR: [313] KSPSolve line 331 src/ksp/ksp/interface/itfunc.c
[313]PETSC ERROR: [313] SNES_KSPSolve line 3394 src/snes/interface/snes.c
[313]PETSC ERROR: [313] SNESSolve_LS line 142 src/snes/impls/ls/ls.c
[401]PETSC ERROR:
------------------------------------------------------------------------
[401]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[401]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[401]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[401]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[401]PETSC ERROR: likely location of problem given in stack below
[401]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[313]PETSC ERROR: [313] SNESSolve line 2647 src/snes/interface/snes.c
[313]PETSC ERROR: [313] TimeStep line 1554
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[313]PETSC ERROR: [313] SolveSteadyState line 1429
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[313]PETSC ERROR: [313] ComputefixedBoundary line 588
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 313 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: [313] SetReferenceElement line 424
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[313]PETSC ERROR: --------------------- Error Message
------------------------------------
[313]PETSC ERROR: Signal received!
[313]PETSC ERROR:
------------------------------------------------------------------------
[313]PETSC ERROR: Petsc Release Version 3.2.0, Patch 1, Mon Sep 12 16:01:51
CDT 2011
[313]PETSC ERROR: See docs/changes/index.html for recent updates.
[313]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[313]PETSC ERROR: See docs/index.html for manual pages.
[313]PETSC ERROR:
------------------------------------------------------------------------
[313]PETSC ERROR: ./joab on a Janus-deb named node1739 by ronglian Sun Nov
27 12:50:41 2011
[313]PETSC ERROR: Libraries linked from
/home/ronglian/soft/petsc-3.2-p1/Janus-debug/lib
[313]PETSC ERROR: Configure run at Tue Sep 13 18:32:21 2011
[313]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
--known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1
--with-mpi-shared-libraries=1 --known-mpi-shared-libraries=0
--download-f-blas-lapack=1 --download-hypre=1 --download-superlu=1
--download-parmetis=1 --download-superlu_dist=1 --download-blacs=1
--download-scalapack=1 --with-debugging=1
[313]PETSC ERROR:
------------------------------------------------------------------------
[313]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[401]PETSC ERROR: Note: The EXACT line numbers in the stack are not
available,
[401]PETSC ERROR:       INSTEAD the line number of the start of the function
[401]PETSC ERROR:       is given.
[401]PETSC ERROR: [401] MatLUFactorNumeric_SuperLU_DIST line 280
src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
[401]PETSC ERROR: [401] MatLUFactorNumeric line 2864
src/mat/interface/matrix.c
[401]PETSC ERROR: [401] PCApply line 373 src/ksp/pc/interface/precon.c
[401]PETSC ERROR: [401] FGMREScycle line 119
src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[401]PETSC ERROR: [401] KSPSolve_FGMRES line 282
src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[401]PETSC ERROR: [401] KSPSolve line 331 src/ksp/ksp/interface/itfunc.c
[401]PETSC ERROR: [401] SNES_KSPSolve line 3394 src/snes/interface/snes.c
[401]PETSC ERROR: [401] SNESSolve_LS line 142 src/snes/impls/ls/ls.c
[401]PETSC ERROR: [401] SNESSolve line 2647 src/snes/interface/snes.c
[401]PETSC ERROR: [401] TimeStep line 1554
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[401]PETSC ERROR: [401] SolveSteadyState line 1429
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[401]PETSC ERROR: [401] ComputefixedBoundary line 588
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: [401] SetReferenceElement line 424
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[401]PETSC ERROR: --------------------- Error Message
------------------------------------
[401]PETSC ERROR: Signal received!
[401]PETSC ERROR:
------------------------------------------------------------------------
[401]PETSC ERROR: Petsc Release Version 3.2.0, Patch 1, Mon Sep 12 16:01:51
CDT 2011
[401]PETSC ERROR: See docs/changes/index.html for recent updates.
[401]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[401]PETSC ERROR: See docs/index.html for manual pages.
[401]PETSC ERROR:
------------------------------------------------------------------------
[401]PETSC ERROR: ./joab on a Janus-deb named node1708 by ronglian Sun Nov
27 12:50:41 2011
[401]PETSC ERROR: Libraries linked from
/home/ronglian/soft/petsc-3.2-p1/Janus-debug/lib
[401]PETSC ERROR: Configure run at Tue Sep 13 18:32:21 2011
[401]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
--known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1
--with-mpi-shared-libraries=1 --known-mpi-shared-libraries=0
--download-f-blas-lapack=1 --download-hypre=1 --download-superlu=1
--download-parmetis=1 --download-superlu_dist=1 --download-blacs=1
--download-scalapack=1 --with-debugging=1
[401]PETSC ERROR:
------------------------------------------------------------------------
[401]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 107 106 107 0
[511]PETSC ERROR:
------------------------------------------------------------------------
[511]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[511]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[511]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[511]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[511]PETSC ERROR: likely location of problem given in stack below
[511]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[511]PETSC ERROR: Note: The EXACT line numbers in the stack are not
available,
[511]PETSC ERROR:       INSTEAD the line number of the start of the function
[511]PETSC ERROR:       is given.
[511]PETSC ERROR: [511] MatLUFactorNumeric_SuperLU_DIST line 280
src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
[511]PETSC ERROR: [511] MatLUFactorNumeric line 2864
src/mat/interface/matrix.c
[511]PETSC ERROR: [511] PCApply line 373 src/ksp/pc/interface/precon.c
[511]PETSC ERROR: [511] FGMREScycle line 119
src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[511]PETSC ERROR: [511] KSPSolve_FGMRES line 282
src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[511]PETSC ERROR: [511] KSPSolve line 331 src/ksp/ksp/interface/itfunc.c
[511]PETSC ERROR: [511] SNES_KSPSolve line 3394 src/snes/interface/snes.c
[511]PETSC ERROR: [511] SNESSolve_LS line 142 src/snes/impls/ls/ls.c
[511]PETSC ERROR: [511] SNESSolve line 2647 src/snes/interface/snes.c
[511]PETSC ERROR: [511] TimeStep line 1554
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[511]PETSC ERROR: [511] SolveSteadyState line 1429
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[511]PETSC ERROR: [511] ComputefixedBoundary line 588
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: [511] SetReferenceElement line 424
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[511]PETSC ERROR: --------------------- Error Message
------------------------------------
[511]PETSC ERROR: Signal received!
[511]PETSC ERROR:
------------------------------------------------------------------------
[511]PETSC ERROR: Petsc Release Version 3.2.0, Patch 1, Mon Sep 12 16:01:51
CDT 2011
[511]PETSC ERROR: See docs/changes/index.html for recent updates.
[511]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[511]PETSC ERROR: See docs/index.html for manual pages.
[511]PETSC ERROR:
------------------------------------------------------------------------
[511]PETSC ERROR: ./joab on a Janus-deb named node1376 by ronglian Sun Nov
27 12:50:41 2011
[511]PETSC ERROR: Libraries linked from
/home/ronglian/soft/petsc-3.2-p1/Janus-debug/lib
[511]PETSC ERROR: Configure run at Tue Sep 13 18:32:21 2011
[511]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
--known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1
--with-mpi-shared-libraries=1 --known-mpi-shared-libraries=0
--download-f-blas-lapack=1 --download-hypre=1 --download-superlu=1
--download-parmetis=1 --download-superlu_dist=1 --download-blacs=1
--download-scalapack=1 --with-debugging=1
[511]PETSC ERROR:
------------------------------------------------------------------------
[511]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 107 106 107 0
[404]PETSC ERROR:
------------------------------------------------------------------------
[404]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[404]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[404]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[404]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[404]PETSC ERROR: likely location of problem given in stack below
[404]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[404]PETSC ERROR: Note: The EXACT line numbers in the stack are not
available,
[404]PETSC ERROR:       INSTEAD the line number of the start of the function
[404]PETSC ERROR:       is given.
[404]PETSC ERROR: [404] MatLUFactorNumeric_SuperLU_DIST line 280
src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
[404]PETSC ERROR: [404] MatLUFactorNumeric line 2864
src/mat/interface/matrix.c
[404]PETSC ERROR: [404] PCApply line 373 src/ksp/pc/interface/precon.c
[404]PETSC ERROR: [404] FGMREScycle line 119
src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[404]PETSC ERROR: [404] KSPSolve_FGMRES line 282
src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[404]PETSC ERROR: [404] KSPSolve line 331 src/ksp/ksp/interface/itfunc.c
[404]PETSC ERROR: [404] SNES_KSPSolve line 3394 src/snes/interface/snes.c
[404]PETSC ERROR: [404] SNESSolve_LS line 142 src/snes/impls/ls/ls.c
[404]PETSC ERROR: [404] SNESSolve line 2647 src/snes/interface/snes.c
[404]PETSC ERROR: [404] TimeStep line 1554
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[404]PETSC ERROR: [404] SolveSteadyState line 1429
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[404]PETSC ERROR: [404] ComputefixedBoundary line 588
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: [404] SetReferenceElement line 424
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[404]PETSC ERROR: --------------------- Error Message
------------------------------------
[404]PETSC ERROR: Signal received!
[404]PETSC ERROR:
------------------------------------------------------------------------
[404]PETSC ERROR: Petsc Release Version 3.2.0, Patch 1, Mon Sep 12 16:01:51
CDT 2011
[404]PETSC ERROR: See docs/changes/index.html for recent updates.
[404]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[404]PETSC ERROR: See docs/index.html for manual pages.
[404]PETSC ERROR:
------------------------------------------------------------------------
[404]PETSC ERROR: ./joab on a Janus-deb named node1708 by ronglian Sun Nov
27 12:50:41 2011
[404]PETSC ERROR: Libraries linked from
/home/ronglian/soft/petsc-3.2-p1/Janus-debug/lib
[404]PETSC ERROR: Configure run at Tue Sep 13 18:32:21 2011
[404]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
--known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1
--with-mpi-shared-libraries=1 --known-mpi-shared-libraries=0
--download-f-blas-lapack=1 --download-hypre=1 --download-superlu=1
--download-parmetis=1 --download-superlu_dist=1 --download-blacs=1
--download-scalapack=1 --with-debugging=1
[404]PETSC ERROR:
------------------------------------------------------------------------
[404]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 107 106 107 0
[371]PETSC ERROR:
------------------------------------------------------------------------
[371]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[371]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[371]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[371]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[371]PETSC ERROR: likely location of problem given in stack below
[371]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[371]PETSC ERROR: Note: The EXACT line numbers in the stack are not
available,
[371]PETSC ERROR:       INSTEAD the line number of the start of the function
[371]PETSC ERROR:       is given.
[371]PETSC ERROR: [371] MatLUFactorNumeric_SuperLU_DIST line 280
src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
[371]PETSC ERROR: [371] MatLUFactorNumeric line 2864
src/mat/interface/matrix.c
[371]PETSC ERROR: [371] PCApply line 373 src/ksp/pc/interface/precon.c
[371]PETSC ERROR: [371] FGMREScycle line 119
src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[371]PETSC ERROR: [371] KSPSolve_FGMRES line 282
src/ksp/ksp/impls/gmres/fgmres/fgmres.c
[371]PETSC ERROR: [371] KSPSolve line 331 src/ksp/ksp/interface/itfunc.c
[371]PETSC ERROR: [371] SNES_KSPSolve line 3394 src/snes/interface/snes.c
[371]PETSC ERROR: [371] SNESSolve_LS line 142 src/snes/impls/ls/ls.c
[371]PETSC ERROR: [371] SNESSolve line 2647 src/snes/interface/snes.c
[371]PETSC ERROR: [371] TimeStep line 1554
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[371]PETSC ERROR: [371] SolveSteadyState line 1429
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[371]PETSC ERROR: [371] ComputefixedBoundary line 588
/home/rlchen/rlchen/soft/fixedmesh/code_changed/joab.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] Elements line 290
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c
[371]PETSC ERROR: [371] SetReferenceElement line 424
/home/rlchen/rlchen/soft/fixedmesh/code_changed/setelement.c


> This is part of the graph library Metis. Perhaps an invalid graph was
> passed to Metis? Without a stack trace (you can configure
> -with-debugging=1, the default), we don't even know whether this error was
> reached through PETSc, through your code, or through another library.
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> ------------------------------
>
> _______________________________________________
> petsc-users mailing list
> petsc-users at mcs.anl.gov
> https://lists.mcs.anl.gov/mailman/listinfo/petsc-users
>
>
> End of petsc-users Digest, Vol 35, Issue 84
> *******************************************
>
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