[petsc-users] Undefined symbols 'petscstack' and 'PetscMemzero'

[Aron Ahmadia]

Hi Miguel,

Please send the complete configure.log and make.log to
petsc-maint at mcs.anl.gov

Are you able to build with --with-shared=0?

A

On Wed, May 25, 2011 at 1:38 PM, Miguel Fosas <miguel.fosas at gmail.com>wrote:

> Dear all,
>
> I'm trying to compile PETSc (3.1-p8) on an SGI Altix using Intel C/C++
> compilers (the exact configure line is shown below). When trying to perform
> the tests, the compilation of the examples fails because the linker is not
> able to find the symbols 'petscstack' and "PetscMemzero'. On top of that, nm
> returns:
>
> $ nm $PETSC_DIR/lib/*.so | grep PetscMemzero | c++filt
>                  U PetscMemzero(void*, unsigned long)
>
> $ nm $PETSC_DIR/lib/*.so | grep petscstack
>                  U petscstack
>
> The output of nm is the same for *.a
>
> The compilation of the examples returns:
> ~/local/petsc/lib/libpetsc.so: undefined reference to `petscstack'
> ~/local/petsc/lib/libpetsc.so: undefined reference to `PetscMemzero(void*,
> unsigned long)'
>
> and the configuration line is:
>
> ./configure --prefix=$HOME/local/petsc --with-clanguage=c++ --with-mpi=yes
> --with-mpi-shared=1 --with-scalar-type=complex --with-fortran
> --with-fortran-kernels=1 --with-cc=icc --with-fc=ifort --with-cxx=icpc
> --with-debugging=0 --with-blas-lapack-dir=/usr/local/intel/mkl/
> 10.2.2.025/lib/64 --with-shared=1 -with-x=1 --with-batch=1
> --known-mpi-shared=0 --COPTFLAGS=-O2 --CXXOPTFLAGS=-O2 --FOPTFLAGS=-O2
> --with-hdf5-dir=$HOME/local
>
> Is there any option that might be causing this problem?
>
> Thanks,
>
> Miguel.
>
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