[petsc-users] Fatal error in MPI_Allreduce: Error message texts are not available[cli_9]: aborting job:

Fri Aug 5 17:41:09 CDT 2011

I have a 2x6core. My solver works fine only on up to 8 processes,
above that it always crashes with the below cited error. I did not yet
valgrind etc. because I am in a desperate need to fix it quickly. I am
just wondering what can potentially be the culprit.

PS. I am not using MPI_Allreduce anywhere in my code.

Many thanks for any hints,
Dominik

Fatal error in MPI_Allreduce: Error message texts are not
available[cli_9]: aborting job:
Fatal error in MPI_Allreduce: Error message texts are not available
Fatal error in MPI_Allreduce: Error message texts are not
available[cli_1]: aborting job:
Fatal error in MPI_Allreduce: Error message texts are not available
Fatal error in MPI_Allreduce: Error message texts are not
available[cli_7]: aborting job:
Fatal error in MPI_Allreduce: Error message texts are not available
INTERNAL ERROR: Invalid error class (66) encountered while returning from
MPI_Allreduce.  Please file a bug report.  No error stack is available.
Fatal error in MPI_Allreduce: Error message texts are not
available[cli_11]: aborting job:
Fatal error in MPI_Allreduce: Error message texts are not available
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 3 Quit: Some other process (or
the batch system) has told this process to end
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR:       INSTEAD the line number of the start of the function
[0]PETSC ERROR:       is given.
[0]PETSC ERROR: [0] MatAssemblyBegin_MPIAIJ line 462
src/mat/impls/aij/mpi/mpiaij.c
[0]PETSC ERROR: [0] MatAssemblyBegin line 4553 src/mat/interface/matrix.c
[0]PETSC ERROR: [0] User provided functi[2]PETSC ERROR:
------------------------------------------------------------------------
[2]PETSC ERROR: Caught signal number 3 Quit: Some other process (or
the batch system) has told this process to end
[2]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[2]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[2]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[2]PETSC ERROR: likely location of problem given in stack below
[2]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[2]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[2]PETSC ERROR:       INSTEAD the line number of the start of the function
[2]PETSC ERROR:       is given.
[2]PETSC ERROR: [2] VecAssemblyBegin line 157 src/vec/vec/interface/vector.c
[2]PETSC ERROR: [2] User provided function line 160
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[INTERNAL ERROR: Invalid error class (66) encountered while returning from
MPI_Allreduce.  Please file a bug report.  No error stack is available.
Fatal error in MPI_Allreduce: Error message texts are not
available[cli_3]: aborting job:
Fatal error in MPI_Allreduce: Error message texts are not available
[4]PETSC ERROR:
------------------------------------------------------------------------
[4]PETSC ERROR: Caught signal number 3 Quit: Some other process (or
the batch system) has told this process to end
[4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[4]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[4]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[4]PETSC ERROR: likely location of problem given in stack below
[4]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[4]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[4]PETSC ERROR:       INSTEAD the line number of the start of the function
[4]PETSC ERROR:       is given.
[4]PETSC ERROR: [4] MatAssemblyBegin_MPIAIJ line 462
src/mat/impls/aij/mpi/mpiaij.c
[4]PETSC ERROR: [4] MatAssemblyBegin line 4553 src/mat/interface/matrix.c
[4]PETSC ERROR: [4] User provided functiINTERNAL ERROR: Invalid error
class (66) encountered while returning from
MPI_Allreduce.  Please file a bug report.  No error stack is available.
Fatal error in MPI_Allreduce: Error message texts are not
available[cli_5]: aborting job:
Fatal error in MPI_Allreduce: Error message texts are not available
[6]PETSC ERROR:
------------------------------------------------------------------------
[6]PETSC ERROR: Caught signal number 3 Quit: Some other process (or
the batch system) has told this process to end
[6]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[6]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[6]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[6]PETSC ERROR: likely location of problem given in stack below
[6]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[6]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[6]PETSC ERROR:       INSTEAD the line number of the start of the function
[6]PETSC ERROR:       is given.
[6]PETSC ERROR: [6] MatAssemblyBegin_MPIAIJ line 462
src/mat/impls/aij/mpi/mpiaij.c
[6]PETSC ERROR: [6] MatAssemblyBegin line 4553 src/mat/interface/matrix.c
[6]PETSC ERROR: [6] User provided functiINTERNAL ERROR: Invalid error
class (66) encountered while returning from
MPI_Allreduce.  Please file a bug report.  No error stack is available.
Fatal error in MPI_Allreduce: Error message texts are not
available[cli_8]: aborting job:
Fatal error in MPI_Allreduce: Error message texts are not available
[10]PETSC ERROR:
------------------------------------------------------------------------
[10]PETSC ERROR: Caught signal number 3 Quit: Some other process (or
the batch system) has told this process to end
[10]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[10]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[10]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[10]PETSC ERROR: likely location of problem given in stack below
[10]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[10]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[10]PETSC ERROR:       INSTEAD the line number of the start of the function
[10]PETSC ERROR:       is given.
[10]PETSC ERROR: [10] VecAssemblyBegin line 157 src/vec/vec/interface/vector.c
[10]PETSC ERROR: [10] User provided function line 160
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/on line 294
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[0]PETSC ERROR: [0] User provided function line 627
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17
13:37:48 CDT 2011
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Unknown Name on a linux-gnu named nexo by dsz Sat Aug
6 00:35:58 2011
[0]PETSC ERROR: Libraries linked from
/home/dsz/pack/petsc-3.1-p8/linux-gnu-c-debug/lib
[0]PETSC ERROR: Configure run at Sat Aug  6 00:02:58 2011
[0]PETSC ERROR: Config2]PETSC ERROR: [2] User provided function line
294 "unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[2]PETSC ERROR: [2] User provided function line 627
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[2]PETSC ERROR: --------------------- Error Message
------------------------------------
[2]PETSC ERROR: Signal received!
[2]PETSC ERROR:
------------------------------------------------------------------------
[2]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17
13:37:48 CDT 2011
[2]PETSC ERROR: See docs/changes/index.html for recent updates.
[2]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[2]PETSC ERROR: See docs/index.html for manual pages.
[2]PETSC ERROR:
------------------------------------------------------------------------
[2]PETSC ERROR: Unknown Name on a linux-gnu named nexo by dsz Sat Aug
6 00:35:58 2011
[2]PETSC ERROR: Libraries linked from
/home/dsz/pack/petsc-3.1-p8/linux-gnu-c-debug/lib
[2]PETSC ERROR: Configure run at Sat Aug on line 294
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[4]PETSC ERROR: [4] User provided function line 627
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[4]PETSC ERROR: --------------------- Error Message
------------------------------------
[4]PETSC ERROR: Signal received!
[4]PETSC ERROR:
------------------------------------------------------------------------
[4]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17
13:37:48 CDT 2011
[4]PETSC ERROR: See docs/changes/index.html for recent updates.
[4]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[4]PETSC ERROR: See docs/index.html for manual pages.
[4]PETSC ERROR:
------------------------------------------------------------------------
[4]PETSC ERROR: Unknown Name on a linux-gnu named nexo by dsz Sat Aug
6 00:35:58 2011
[4]PETSC ERROR: Libraries linked from
/home/dsz/pack/petsc-3.1-p8/linux-gnu-c-debug/lib
[4]PETSC ERROR: Configure run at Sat Aug  6 00:02:58 2011
[4]PETSC ERROR: Configon line 294
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[6]PETSC ERROR: [6] User provided function line 627
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[6]PETSC ERROR: --------------------- Error Message
------------------------------------
[6]PETSC ERROR: Signal received!
[6]PETSC ERROR:
------------------------------------------------------------------------
[6]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17
13:37:48 CDT 2011
[6]PETSC ERROR: See docs/changes/index.html for recent updates.
[6]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[6]PETSC ERROR: See docs/index.html for manual pages.
[6]PETSC ERROR:
------------------------------------------------------------------------
[6]PETSC ERROR: Unknown Name on a linux-gnu named nexo by dsz Sat Aug
6 00:35:58 2011
[6]PETSC ERROR: Libraries linked from
/home/dsz/pack/petsc-3.1-p8/linux-gnu-c-debug/lib
[6]PETSC ERROR: Configure run at Sat Aug  6 00:02:58 2011
[6]PETSC ERROR: ConfigSM3T4mpi.cxx
[10]PETSC ERROR: [10] User provided function line 294
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[10]PETSC ERROR: [10] User provided function line 627
"unknowndirectory/"/home/dsz/src/framework/trunk/solve/SM3T4mpi.cxx
[10]PETSC ERROR: --------------------- Error Message
------------------------------------
[10]PETSC ERROR: Signal received!
[10]PETSC ERROR:
------------------------------------------------------------------------
[10]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17
13:37:48 CDT 2011
[10]PETSC ERROR: See docs/changes/index.html for recent updates.
[10]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[10]PETSC ERROR: See docs/index.html for manual pages.
[10]PETSC ERROR:
------------------------------------------------------------------------
[10]PETSC ERROR: Unknown Name on a linux-gnu named nexo by dsz Sat Aug
 6 00:35:58 2011
[10]PETSC ERROR: Libraries linked from
/home/dsz/pack/petsc-3.1-p8/linux-gnu-c-debug/lib
[10]PETSC ERRure options PETSC_DIR=/home/dsz/pack/petsc-3.1-p8
PETSC_ARCH=linux-gnu-c-debug --download-f-blas-lapack=1
--download-mpich=1 --download-hypre=1 --with-parmetis=1
--download-parmetis=1 --with-x=0 --with-debugging=1
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0[cli_0]:
aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
 6 00:02:58 2011
[2]PETSC ERROR: Configure options
PETSC_DIR=/home/dsz/pack/petsc-3.1-p8 PETSC_ARCH=linux-gnu-c-debug
--download-f-blas-lapack=1 --download-mpich=1 --download-hypre=1
--with-parmetis=1 --download-parmetis=1 --with-x=0 --with-debugging=1
[2]PETSC ERROR:
------------------------------------------------------------------------
[2]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 2[cli_2]:
aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 2
ure options PETSC_DIR=/home/dsz/pack/petsc-3.1-p8
PETSC_ARCH=linux-gnu-c-debug --download-f-blas-lapack=1
--download-mpich=1 --download-hypre=1 --with-parmetis=1
--download-parmetis=1 --with-x=0 --with-debugging=1
[4]PETSC ERROR:
------------------------------------------------------------------------
[4]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 4[cli_4]:
aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 4
ure options PETSC_DIR=/home/dsz/pack/petsc-3.1-p8
PETSC_ARCH=linux-gnu-c-debug --download-f-blas-lapack=1
--download-mpich=1 --download-hypre=1 --with-parmetis=1
--download-parmetis=1 --with-x=0 --with-debugging=1
[6]PETSC ERROR:
------------------------------------------------------------------------
[6]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 6[cli_6]:
aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 6
OR: Configure run at Sat Aug  6 00:02:58 2011
[10]PETSC ERROR: Configure options
PETSC_DIR=/home/dsz/pack/petsc-3.1-p8 PETSC_ARCH=linux-gnu-c-debug
--download-f-blas-lapack=1 --download-mpich=1 --download-hypre=1
--with-parmetis=1 --download-parmetis=1 --with-x=0 --with-debugging=1
[10]PETSC ERROR:
------------------------------------------------------------------------
[10]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 10[cli_10]:
aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 10