[petsc-users] petsc with hypre on Windows

Thu Jul 29 19:21:23 CDT 2010

  Are you sure the version of hypre you installed is the version that works with the version of PETSc you are installing. Check config/PETSc/packages/hypre.py for the version that it needs

   Barry

On Jul 29, 2010, at 7:06 PM, Dominik Szczerba wrote:

> I have now managed to properly compile hypre natively and petsc configures correctly with it.
> However, I get errors during building.
> As requested I am sending win64-msvc-release/conf/configure.log to petsc-maint at mcs.anl.gov
> Any hints are appreciated.
> 
> Dominik
> 
> mhyp.c
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(165) : error C2143: syntax error : missing ';' before 'type'
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(166) : error C2275: 'hypre_AuxParCSRMatrix' : illegal use of this type as an expression
>         C:\Users\Dominik\Programs\HYPRE-~1.0B\src\hypre\include\_hypre_IJ_mv.h(82) : see declaration of 'hypre_AuxParCSRMatrix'
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(166) : error C2065: 'aux_matrix' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(167) : error C2275: 'hypre_CSRMatrix' : illegal use of this type as an expression
>         c:\users\dominik\programs\hypre-2.6.0b\src\hypre\include\seq_mv.h(62) : see declaration of 'hypre_CSRMatrix'
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(167) : error C2065: 'hdiag' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(167) : error C2065: 'hoffd' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(167) : error C2100: illegal indirection
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(176) : error C2065: 'par_matrix' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(176) : warning C4047: '=' : 'int' differs in levels of indirection from 'hypre_ParCSRMatrix *'
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(177) : error C2065: 'aux_matrix' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(177) : warning C4047: '=' : 'int' differs in levels of indirection from 'hypre_AuxParCSRMatrix *'
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(178) : error C2065: 'hdiag' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(178) : error C2065: 'par_matrix' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(178) : error C2223: left of '->diag' must point to struct/union
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(179) : error C2065: 'hoffd' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(179) : error C2065: 'par_matrix' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(179) : error C2223: left of '->offd' must point to struct/union
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(185) : error C2065: 'hdiag' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(185) : error C2223: left of '->i' must point to struct/union
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(185) : warning C4022: 'PetscMemcpy' : pointer mismatch for actual parameter 2
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(185) : error C2198: 'PetscMemcpy' : too few arguments for call
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(186) : error C2065: 'hdiag' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(186) : error C2223: left of '->j' must point to struct/union
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(186) : warning C4022: 'PetscMemcpy' : pointer mismatch for actual parameter 2
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(186) : error C2198: 'PetscMemcpy' : too few arguments for call
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(187) : error C2065: 'hdiag' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(187) : error C2223: left of '->data' must point to struct/union
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(187) : warning C4022: 'PetscMemcpy' : pointer mismatch for actual parameter 2
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(187) : error C2198: 'PetscMemcpy' : too few arguments for call
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(189) : error C2065: 'aux_matrix' : undeclared identifier
> C:\Users\Dominik\Programs\PETSC-~3.1-P\src\dm\da\utils\mhyp.c(189) : error C2223: left of '->need_aux' must point to struct/union
> LINK : fatal error LNK1181: cannot open input file 'mhyp.o'
> 
> 
> 
> On Mon, Jul 26, 2010 at 2:00 PM, Wee-Beng TAY <zonexo at gmail.com> wrote:
> Hi all,
> 
> I actually tried compiling hypre 2.6b using windows. I can't remember which version I'm using (Vs2005, 2008) but I followed the instructions carefully and it worked. Compiling, linking in IDE are also ok. However, only the C code work. The fortran code just can't work, even after much help from the developers.
> 
> Only the 2.6b version works with windows. However, I have not tried using both hypre and PETSc in windows.
> Thank you very much and have a nice day!
> 
> Yours sincerely,
> 
> Wee-Beng Tay
> 
> On 7/26/2010 5:12 PM, Matthew Knepley wrote:
>> 
>> This is what we mean when we say that Hypre does not support Windows. It really doesn't. You
>> can try mailing their list, but I do not anticipate a response other than "We do not support Windows".
>> The build system is completely broken for this platform, as you have experienced. So, my conclusion
>> would be to
>> 
>>   a) switch packages to something that does support Windows
>> 
>> or
>> 
>>   b) switch platforms to something that Hypre supports
>> 
>>   Thanks,
>> 
>>      Matt
>> 
>> On Mon, Jul 26, 2010 at 6:40 PM, Dominik Szczerba <dominik at itis.ethz.ch> wrote:
>> I just reinstalled MPICH to C: (and not the default location Program FIles). I also followed Barry and added --with-cxx="win32fe cl"
>> 
>> Now I am getting errors when linking to hypre. BOTH hypre and petsc are compiled with MSVC 2008 64bit (configured with cygwin). The library is called libHYPRE.a, and as I watched it compile 'cl' was used for compilation. It failed to link (*.lib not found) as *.a so I renamed it to libHYPRE.lib. Now the error is:
>> 
>> Executing: /cygdrive/c/Users/Dominik/Programs/petsc-3.1-p3/bin/win32fe/win32fe cl  -o conftest.exe    -MT -wd4996  conftest.o  -L/cygdrive/c/Users/Dominik/Programs/hypre-2.6.0b/src/hypre/lib -L/cygdri
>> ve/c/Users/Dominik/Programs/hypre-2.6.0b/src/hypre/lib -lHYPRE /cygdrive/c/MPICH2/lib/fmpich2.lib /cygdrive/c/MPICH2/lib/fmpich2g.lib /cygdrive/c/MPICH2/lib/mpi.lib -L/cygdrive/c/Users/Dominik/Program
>> s/petsc-3.1-p3/win64-msvc-release/lib -L/cygdrive/c/Users/Dominik/Programs/petsc-3.1-p3/win64-msvc-release/lib -lf2clapack -L/cygdrive/c/Users/Dominik/Programs/petsc-3.1-p3/win64-msvc-release/lib -L/c
>> ygdrive/c/Users/Dominik/Programs/petsc-3.1-p3/win64-msvc-release/lib -lf2cblas Ws2_32.lib
>> sh: C:\Users\Dominik\Programs\HYPRE-~1.0B\src\hypre\lib\libHYPRE.lib : warning LNK4003: invalid library format; library ignored
>> 
>> I configured with:
>> --with-mpi-dir=/cygdrive/c/MPICH2/ --with-hypre-dir=/cygdrive/c/Users/Dominik/Programs/hypre-2.6.0b/src/hypre/
>> 
>> but:
>> 
>> $ ls -la /cygdrive/c/Users/Dominik/Programs/hypre-2.6.0b/src/hypre/lib
>> total 8624
>> drwxr-xr-x+ 1 Dominik None       0 2010-07-26 10:17 .
>> drwxr-xr-x+ 1 Dominik None       0 2010-07-23 23:07 ..
>> -rw-r--r--+ 1 Dominik None 8830476 2010-07-23 23:13 libHYPRE.lib
>> 
>> How can I go on from here?
>> 
>> Regards,
>> Dominik
>> 
>> On Sun, Jul 25, 2010 at 11:10 PM, Dominik Szczerba <dominik at itis.ethz.ch> wrote:
>> Hi,
>> 
>> I am able to build petsc-3.1-p3 on Windows 7 64bit using native compiler (MSVC 2008) with:
>> 
>> ./config/configure.py PETSC_DIR=$PWD PETSC_ARCH=win64-msvc-release --download-c-blas-lapack=1 --with-parmetis=1 --download-parmetis=1 --with-x=0 --with-debugging=0 --with-cc='win32fe cl' --with-fc=0
>> 
>> I also managed to build hypre-2.6.0b separately myself using the same compiler. Now the last problem is to build petsc with this external package (--download-hypre will fail). I add to the above configure line:
>> 
>> --with-hypre-dir=/cygdrive/c/Users/Dominik/Programs/hypre-2.6.0b/src/hypre/
>> 
>> but the configuration fails with:
>> 
>> *******************************************************************************
>>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
>> -------------------------------------------------------------------------------
>> C++ error! mpi.h could not be located at: ['/cygdrive/c/Program Files/MPICH2/include']
>> *******************************************************************************
>> 
>> This error is clearly wrong as:
>> 
>> $ ls -la '/cygdrive/c/Program Files/MPICH2/include'
>> total 309
>> drwx------+ 1 SYSTEM SYSTEM  4096 2010-07-21 15:54 .
>> drwx------+ 1 SYSTEM SYSTEM  4096 2010-07-21 15:54 ..
>> -rwx------+ 1 SYSTEM SYSTEM  4776 2007-11-02 15:50 clog_commset.h
>> -rwx------+ 1 SYSTEM SYSTEM   696 2007-11-02 15:50 clog_const.h
>> -rwx------+ 1 SYSTEM SYSTEM   731 2010-02-22 16:22 clog_inttypes.h
>> -rwx------+ 1 SYSTEM SYSTEM  1272 2007-11-02 15:50 clog_uuid.h
>> -rwx------+ 1 SYSTEM SYSTEM   437 2007-11-02 15:50 mpe.h
>> -rwx------+ 1 SYSTEM SYSTEM 11021 2008-01-28 13:59 mpe_log.h
>> -rwx------+ 1 SYSTEM SYSTEM  1833 2007-11-02 15:50 mpe_logf.h
>> -rwx------+ 1 SYSTEM SYSTEM  1159 2007-11-02 15:50 mpe_misc.h
>> -rwx------+ 1 SYSTEM SYSTEM 55623 2010-02-22 16:22 mpi.h
>> -rwx------+ 1 SYSTEM SYSTEM  2439 2010-02-22 17:11 mpi.mod
>> -rwx------+ 1 SYSTEM SYSTEM 14731 2010-02-22 17:11 mpi_base.mod
>> -rwx------+ 1 SYSTEM SYSTEM 35003 2010-02-22 17:11 mpi_constants.mod
>> -rwx------+ 1 SYSTEM SYSTEM  8417 2010-02-22 17:11 mpi_sizeofs.mod
>> -rwx------+ 1 SYSTEM SYSTEM 97301 2010-02-22 16:22 mpicxx.h
>> -rwx------+ 1 SYSTEM SYSTEM 18610 2010-02-22 16:22 mpif.h
>> -rwx------+ 1 SYSTEM SYSTEM 16765 2010-02-22 16:22 mpio.h
>> 
>> Inspecting the log file shows:
>> 
>> Executing: g++ -c -o conftest.o  -Wall -Wwrite-strings -Wno-strict-aliasing -O    -I/cygdrive/c/Program\ Files/MPICH2/include conftest.cc
>> 
>> I think the error is in the white space in "Program Files". I failed to convince hypre to use the default system installation of MPICH. I *had* to make a hardcopy in C: to avoid the white space.
>> 
>> I am sending the log to the maintainters, just in case, because I saw more errors there too.
>> 
>> Any help is greatly appreciated.
>> 
>> Regards,
>> Dominik
>> 
>> 
>> 
>> 
>> -- 
>> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
>> -- Norbert Wiener
> 

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