[petsc-users] Errors while install pets-dev

[(Rebecca) Xuefei YUAN]

Dear Satish,

I switched to install it manually and encounter an error when "make  
test". Here are error messages:

Completed building libraries
=========================================
Now to check if the libraries are working do: make test
=========================================
rebecca at YuanWork:~/soft/petsc-dev$ make test
Running test examples to verify correct installation
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1  
MPI process
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2  
MPI processes
--------------Error detected during compile or link!-----------------------
See http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html
/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/bin/mpif90 -c  -Wall  
-Wno-unused-variable -g   
-I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include  
-I/home/rebecca/soft/petsc-dev/include  
-I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include    
-I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include  
-I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include    -o ex5f.o  
ex5f.F
/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/bin/mpif90 -Wall  
-Wno-unused-variable -g  -o ex5f ex5f.o  
-Wl,-rpath,/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib  
-L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib -lpetscsnes  
-lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc   -lX11  
-Wl,-rpath,/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib  
-L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib -lflapack -lfblas  
-lnsl -lrt -lm -L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib  
-L/usr/lib/gcc/i486-linux-gnu/4.2.4 -ldl -lmpich -lopa -lpthread -lrt  
-lgcc_s -lmpichf90 -lgfortran -lm -lm -ldl -lmpich -lopa -lpthread  
-lrt -lgcc_s -ldl
ex5f.o: In function `MAIN__':
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:103:  
undefined reference to `snescreate_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:120:  
undefined reference to `dacreateglobalvector_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:121:  
undefined reference to `vecduplicate_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:131:  
undefined reference to `dagetcorners_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:133:  
undefined reference to `dagetghostcorners_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:211:  
undefined reference to `snessetfromoptions_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:223:  
undefined reference to `snesgetiterationnumber_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:235:  
undefined reference to `matdestroy_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:236:  
undefined reference to `matdestroy_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:237:  
undefined reference to `vecdestroy_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:238:  
undefined reference to `vecdestroy_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:239:  
undefined reference to `snesdestroy_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:240:  
undefined reference to `dadestroy_'
ex5f.o: In function `forminitialguess_':
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:286:  
undefined reference to `dmgetlocalvector_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:299:  
undefined reference to `dalocaltoglobal_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:300:  
undefined reference to `dmrestorelocalvector_'
ex5f.o: In function `formjacobianlocal_':
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:523:  
undefined reference to `matsetvalueslocal_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:538:  
undefined reference to `matsetvalueslocal_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:542:  
undefined reference to `matassemblybegin_'
/home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:543:  
undefined reference to `matassemblyend_'
collect2: ld returned 1 exit status
make[3]: [ex5f] Error 1 (ignored)
/bin/rm -f ex5f.o
Completed test examples

What could possibly wrong?

Thanks!

Rebecca




Quoting Satish Balay <balay at mcs.anl.gov>:

> Sorry - forgot to mention the url
>
> http://mail.openjdk.java.net/pipermail/build-dev/2007-December/000628.html
>
> Satish
>
> On Mon, 25 Jan 2010, Satish Balay wrote:
>
>> Do you have to use proxy for your http connections? If so - perhaps
>> you can try adding the settings to ~/.hgrc - as this url indicates and
>> see if it fixes the problem.
>>
>> Satish
>>
>> On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote:
>>
>> > Hi,All,
>> >
>> > I try to install a pets-dev locally according to the instruction
>> >
>> > http://www.mcs.anl.gov/petsc/petsc-as/developers/index.html
>> >
>> > I have installed mercurial, but when I get the second step, I get  
>>  some error
>> > like:
>> >
>> > rebecca at YuanWork:~/soft$ hg clone http://petsc.cs.iit.edu/petsc/petsc-dev
>> > destination directory: petsc-dev
>> > abort: error: Name or service not known
>> >
>> > Is there anything wrong?
>> >
>> > Thanks!
>> >
>> >
>>
>>
>
>
>



-- 
(Rebecca) Xuefei YUAN
Department of Applied Physics and Applied Mathematics
Columbia University
Tel:917-399-8032
www.columbia.edu/~xy2102