[petsc-users] successive linear solves
Matthew Knepley
knepley at gmail.com
Tue Feb 2 10:31:00 CST 2010
On Tue, Feb 2, 2010 at 10:23 AM, Umut Tabak <u.tabak at tudelft.nl> wrote:
> Dear all,
>
> I was trying to solve two linear systems in the same ksp context while
> setting the operators with KSPSetOperators. But I am getting a Memory
> corruption error. What I try to do is to set two linear operators and rhs
> vectors and get the solutions, say
>
> for solA, xa,
>
> (Ka-lambs*Ma)*xa = -lambs*KsaT*modeS (I extract lambs from a vector of
> eigenvalues and modeS from a matrix of eigenvectors)
>
> and for solS, xs
>
> (Ks-lamba*Ms)*xs = -Ksa*modeP (similarly lamba is extracted from a vector
> and the modeP also from a matrix of vectors as columns)
>
> I am using MatDuplicate functions to update the operator matrices at each
> iteration, there is not a problem in the first solve, at least no errors,
> but on the second one I am getting the Memory corruption error mentioned
> above. Also one more question is on where to use KSPSetFromOptions on the
> iterations. If I use KSPSetFromOptions on the same iteration twice(before
> solve)I get the same error from this function(this was not also reasonable
> to me). Section of the code is below(a bit crappy however should give the
> idea on what I tried to do). I am sure this is a simple problem but could
> not find the reason.
>
0) ALWAYS send the entire error message
1) ALWAYS check all the return values from the PETSc functions
2) When you get memory corruption, run with valgrind (as it says in the
error message)
3) Solving twice does not produce problems.
Matt
> KSP ksp;
> KSPCreate(PETSC_COMM_WORLD, &ksp);
> for(int j=0; j!=nR; j++)
> {
> //KSPCreate(PETSC_COMM_WORLD, &kspA);
> // duplicate the matrix
> MatDuplicate(Ka, MAT_COPY_VALUES, &OpA);
> //
> MatAXPY(OpA, -eSolverS.getRoot(j), Ma, SAME_NONZERO_PATTERN);
> MatGetColumnVector(eigVecsStr, modeS, j);
> // create the rhs for the operation
> MatMult(KsaT, modeS, rhsA);
> VecScale(rhsA, -eSolverS.getRoot(j));
> cout << "Solving the linear system for pressure side corrections" <<
> endl;
> KSPSetOperators(ksp, OpA, OpA, DIFFERENT_NONZERO_PATTERN);
> //KSPGetPC(kspA, &pcA);
> //PCSetType(pcA, PCJACOBI);
> //KSPSetTolerances(ksp, 1e-7,
> PETSC_DEFAULT,PETSC_DEFAULT,PETSC_DEFAULT);
> //KSPSetFromOptions(kspA);
> // solve
> KSPSolve(ksp,rhsA,solA);
> corA.assignSubVector(solA, 1, ra, j);
> //
> MatDuplicate(Ks, MAT_COPY_VALUES, &OpS);
> MatAXPY(OpS, -eSolverA.getRoot(j), Ms, SAME_NONZERO_PATTERN);
> MatGetColumnVector(eigVecsAco, modeA, j);
> // create the rhs for the operation
> MatMult(Ksa, modeA, rhsS);
> VecScale(rhsS, -1.0);
> cout << "Solving the linear system for structure side corrections" <<
> endl;
> //KSPCreate(PETSC_COMM_WORLD, &kspS);
> KSPSetOperators(ksp, OpS, OpS, DIFFERENT_NONZERO_PATTERN);
> //KSPGetPC(kspS, &pcS);
> //PCSetType(pcS, PCJACOBI);
> //KSPSetTolerances(kspS, 1e-7,
> PETSC_DEFAULT,PETSC_DEFAULT,PETSC_DEFAULT);
> //KSPSetFromOptions(kspS);
> // solve
> KSPSolve(ksp,rhsS,solS);
> //int r,m;
> //VecGetSize(rhsS, &r);
> //VecGetSize(solS, &m);
> //cout << r << " " << m << endl;
> corS.assignSubVector(solS, 1, rs, j);
> cout << "Solved the linear system for structure corrections" << endl;
> }
> corA.finalize(); corS.finalize();
>
> Best,
> Umut
>
>
--
What most experimenters take for granted before they begin their experiments
is infinitely more interesting than any results to which their experiments
lead.
-- Norbert Wiener
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