[petsc-users] VecView() error in BlueGene
(Rebecca) Xuefei YUAN
xy2102 at columbia.edu
Tue Apr 27 04:20:51 CDT 2010
Hi,
I tried the example code /petsc-dev/src/snes/examples/tutorials/ex5.c
on bluegene, but get the following message about the VecView().
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 7 BUS: Bus Error, possibly
illegal memory access
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: --------------------- Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR: INSTEAD the line number of the start of the function
[0]PETSC ERROR: is given.
[0]PETSC ERROR: [0] VecView_MPI line 801 src/vec/vec/impls/mpi/pdvec.c
[0]PETSC ERROR: [0] VecView line 690 src/vec/vec/interface/vector.c
[0]PETSC ERROR: [0] DAView_VTK line 129 src/dm/da/src/daview.c
[0]PETSC ERROR: [0] DAView line 227 src/dm/da/src/daview.c
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development HG revision: unknown HG Date: unknown
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: ./ex5.exe on a arch-bgp- named ionode37 by Unknown Thu
Jan 1 03:03:12 1970
[0]PETSC ERROR: Libraries linked from
/scratch/rebeccaxyf/petsc-dev/arch-bgp-ibm-dbg/lib
[0]PETSC ERROR: Configure run at Mon Apr 26 15:37:29 2010
[0]PETSC ERROR: Configure options --with-cc=mpixlc_r
--with-cxx=mpixlcxx_r --with-fc=mpixlf90_r --with-clanguage=cxx
--with-blas-lapack-lib="-L/opt/share/math_libraries/lapack/ppc64/IBM/
-llapack -lblas" --with-x=0 --with-is-color-value-type=short
--with-shared=0 -CFLAGS="-qmaxmem=-1 -g" -CXXFLAGS="-qmaxmem=-1 -g"
-FFLAGS="-qmaxmem=-1 -g" --with-debugging=1 --with-fortran-kernels=1
--with-batch=1 --known-mpi-shared=0 --known-memcmp-ok
--known-sizeof-char=1 --known-sizeof-void-p=4 --known-sizeof-short=2
--known-sizeof-int=4 --known-sizeof-long=4 --known-sizeof-size_t=4
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=4 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-level1-dcache-assoc=0
--known-level1-dcache-linesize=32 --known-level1-dcache-size=32768
--petsc-arch=bgp-dbg PETSC_ARCH=arch-bgp-ibm-dbg
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
Abort(59) on node 0 (rank 0 in comm 1140850688): application called
MPI_Abort(MPI_COMM_WORLD, 59) - process 0
Also, my code is not working for calling VecView() with error message:
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 7 BUS: Bus Error, possibly
illegal memory access
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: --------------------- Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR: INSTEAD the line number of the start of the function
[0]PETSC ERROR: is given.
[0]PETSC ERROR: [0] VecView_MPI_DA line 508 src/dm/da/src/gr2.c
[0]PETSC ERROR: [0] VecView line 690 src/vec/vec/interface/vector.c
[0]PETSC ERROR: [0] DumpSolutionToMatlab line 1052 twqt2ff.c
[0]PETSC ERROR: [0] Solve line 235 twqt2ff.c
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development HG revision: unknown HG Date: unknown
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: ./twqt2ff.exe on a arch-bgp- named ionode132 by
Unknown Fri Jan 2 00:44:26 1970
[0]PETSC ERROR: Libraries linked from
/scratch/rebeccaxyf/petsc-dev/arch-bgp-ibm-dbg/lib
[0]PETSC ERROR: Configure run at Mon Apr 26 15:37:29 2010
[0]PETSC ERROR: Configure options --with-cc=mpixlc_r
--with-cxx=mpixlcxx_r --with-fc=mpixlf90_r --with-clanguage=cxx
--with-blas-lapack-lib="-L/opt/share/math_libraries/lapack/ppc64/IBM/
-llapack -lblas" --with-x=0 --with-is-color-value-type=short
--with-shared=0 -CFLAGS="-qmaxmem=-1 -g" -CXXFLAGS="-qmaxmem=-1 -g"
-FFLAGS="-qmaxmem=-1 -g" --with-debugging=1 --with-fortran-kernels=1
--with-batch=1 --known-mpi-shared=0 --known-memcmp-ok
--known-sizeof-char=1 --known-sizeof-void-p=4 --known-sizeof-short=2
--known-sizeof-int=4 --known-sizeof-long=4 --known-sizeof-size_t=4
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=4 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-level1-dcache-assoc=0
--known-level1-dcache-linesize=32 --known-level1-dcache-size=32768
--petsc-arch=bgp-dbg PETSC_ARCH=arch-bgp-ibm-dbg
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
Abort(59) on node 0 (rank 0 in comm 1140850688): application called
MPI_Abort(MPI_COMM_WORLD, 59) - process 0
Am I wrong at configure?
Thanks a lot!
Rebecca
--
(Rebecca) Xuefei YUAN
Department of Applied Physics and Applied Mathematics
Columbia University
Tel:917-399-8032
www.columbia.edu/~xy2102
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