include file fortran

[Tahar Amari]

My configure was  (as you can see for  petsc-3.0.0-p5 )

configure -with-cc=gcc --download-mpich=1 --download-parmetis=1 --with- 
#shared=0 --download-f-blas-lapack --with-clanguage=cxx --with-cxx=g++  
--with-fc=ifort --with-dynamic=0

sudo cp -R petsc-3.0.0-p5 /usr/local/
set version=-3.0.0-p5
sudo ln -s petsc${version} petsc


You are right , once I did g++ , found after that those were symbols  
of the intel compiler.



So I am a little embarrassed because if I use as linker  ifort , It  
complains about g++ symbols
and if I use g++ it complains about ifort symbols ?

Do you think there is a solution to this please ?


Tahar


Le 16 mai 09 à 00:15, Matthew Knepley a écrit :

> On Fri, May 15, 2009 at 5:10 PM, Tahar Amari <amari at cpht.polytechnique.fr 
> > wrote:
> I changed CLINKER to g++ and the symbols where found.
>
> This does not make sense. What version are you using? The latest?
>
> Now I have other remaining errors  which seams to be link with some  
> petsc fortran ?
> Do you have any idea please where (which petsc library) those  
> symbols are supposed to be in ?
>
> Those symbols are not in PETSc. They look like Fortran symbols, and  
> so should be included in
> PETSC_TS_LIB, if you configured with the same Fortran compiler that  
> you used to compile
> those files.
>
> If you want to talk about it more, more the discussion to petsc-maint at mcs.anl.gov 
>  and send the
> configure.log.
>
>   Matt
>
> Many thanks
>
> Tahar
>
> Undefined symbols:
>   "_for_stop_core", referenced from:
>       _advmom_cv_ in mh4d.o
>       _advmom_cv_ in mh4d.o
>       _advmom_cv_ in mh4d.o
>       _terminators_mp_terminator_ in terminator.o
>       _terminators_mp_terminator_all_ in terminator.o
>       _tetrahedralgrid_mod_mp_zero_bndr_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_zero_bndr_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_idnt_bndr_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_idnt_bndr_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_v2v_operator_bc_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_v2v_operator_bc_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_tvvaxpy_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_tvvaxpy_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_v2v_scalar_bc_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_v2v_scalar_bc_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_zero_bndr_tvs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_zero_bndr_tvs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_v2v_operator_bc0_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_v2v_operator_bc0_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_v2v_operator_bct_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_v2v_operator_bct_ in tetrahedralgrid.o
>       _xerbla_ in libfblas.a(xerbla.o)
>   "_for_exit", referenced from:
>       _tetrahedralgrid_mod_mp_partition_tetragrid_ in  
> tetrahedralgrid.o
>   "_for_write_seq", referenced from:
>       _wrrsfile_ in mh4d.o
>       _wrrsfile_ in mh4d.o
>       _wrrsfile_ in mh4d.o
>       _tetrahedralgrid_mod_mp_save_tcs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvs_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tcv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_save_tvv_ in tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_write_tetragrid_data_ in  
> tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_write_tetragrid_data_ in  
> tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_write_tetragrid_data_ in  
> tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_write_tetragrid_data_ in  
> tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_write_tetragrid_data_ in  
> tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_write_tetragrid_data_ in  
> tetrahedralgrid.o
>       _tetrahedralgrid_mod_mp_write_tetragrid_data_ in  
> tetrahedralgrid.o
>   "_for_check_mult_overflow", referenced from:
>
>
>
>
> Le 16 mai 09 à 00:00, Matthew Knepley a écrit :
>
>> On Fri, May 15, 2009 at 4:56 PM, Tahar Amari <amari at cpht.polytechnique.fr 
>> > wrote:
>> I am sorry (I might have missed something)
>>
>>
>>
>> If you want to use C++, you should configure using --with- 
>> clanguage=cxx. Then you will get the C++ linker.
>>
>> I do not really want to use C++ linker
>>
>> I did it with the C Linker and got an error. I do not see where the  
>> C++ is now used
>>
>> You have C++ code in there somewhere. It is hard to see what is  
>> going on since we do not have the source.
>>
>>   Matt
>>
>>
>> Tahar
>>
>>
>> cc  -o  mh4d mh4d.o petsc.o comm.o setbc.o local.o gridutil.o  
>> mympi.o terminator.o operator.o shellsort.o edge.o side.o vertex.o  
>> tetrahedron.o rotation.o tetrahedralgrid.o field.o   -I/usr/local/ 
>> hdf/HDF4.2r1/include -L/usr/local/hdf/HDF4.2r1/lib -lmfhdf -ldf - 
>> lsz -ljpeg -lz -L/usr/local/petsc/macx/lib -lpetscsnes -lpetscvec - 
>> lpetscmat -lpetsccontrib -lpetscts -lpetscdm -lpetscksp -lpetsc - 
>> lmpich -lmpichcxx -lpmpich -lfmpich -lmpichf90 -lparmetis -lmetis - 
>> lfblas -lflapack  -L/usr/X11R6/lib -lX11 -lXt -lXext -lX11  -L/usr/ 
>> local/petsc/macx/lib -lpetscsnes -lpetscvec -lpetscmat - 
>> lpetsccontrib -lpetscts -lpetscdm -lpetscksp -lpetsc -lmpich - 
>> lmpichcxx -lpmpich -lfmpich -lmpichf90 -lparmetis -lmetis -lfblas - 
>> lflapack
>> Undefined symbols:
>>  "std::basic_ostringstream<char, std::char_traits<char>,  
>> std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)",  
>> referenced from:
>>      PetscErrorCxx(int, char const*, char const*, char const*, int,  
>> int)in libpetsc.a(err.o)
>>      PETSc::Exception::Exception(std::basic_string<char,  
>> std::char_traits<char>, std::allocator<char> > const&)in  
>> libpetsc.a(err.o)
>>  "_for_stop_core", referenced from:
>>      _advmom_cv_ in mh4d.o
>>      _advmom_cv_ in mh4d.o
>>      _advmom_cv_ in mh4d.o
>>      _terminators_mp_terminator_ in terminator.o
>>      _terminators_mp_terminator_all_ in terminator.o
>>      _tetrahedralgrid_mod_mp_zero_bndr_tvv_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_zero_bndr_tvv_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_idnt_bndr_tvv_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_idnt_bndr_tvv_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_v2v_operator_bc_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_v2v_operator_bc_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_tvvaxpy_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_tvvaxpy_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_v2v_scalar_bc_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_v2v_scalar_bc_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_zero_bndr_tvs_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_zero_bndr_tvs_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_v2v_operator_bc0_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_v2v_operator_bc0_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_v2v_operator_bct_ in tetrahedralgrid.o
>>      _tetrahedralgrid_mod_mp_v2v_operator_bct_ in tetrahedralgrid.o
>>      _xerbla_ in libfblas.a(xerbla.o)
>>  "_for_exit", referenced from:
>>      _tetrahedralgrid_mod_mp_partition_tetragrid_ in  
>> tetrahedralgrid.o
>>
>>
>>
>>
>> -- 
>> What most experimenters take for granted before they begin their  
>> experiments is infinitely more interesting than any results to  
>> which their experiments lead.
>> -- Norbert Wiener
>
>
>
>
> -- 
> What most experimenters take for granted before they begin their  
> experiments is infinitely more interesting than any results to which  
> their experiments lead.
> -- Norbert Wiener

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20090516/c721282b/attachment-0001.htm>