make test

[Yixun Liu]

It has the same errors when I use /usr/lib64/mpi/gcc/openmpi/bin/mpiexec.
md[/home/scratch/yixun/petsc-3.0.0-p3/src/ksp/ksp/examples/tutorials>/usr/lib64/mpi/gcc/openmpi/bin/mpiexec
-np 2 ./ex2


DAT: library load failure: /usr/lib64/libdaplcma.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplcma.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplscm.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplscm.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplscm.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplscm.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplcma.so.1: undefined symbol:
dat_registry_add_provider
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-cma"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-cma-1"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-mthca0-1"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-mthca0-2"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-mlx4_0-1"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-mlx4_0-2"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-iwarp"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
[0,1,0]: uDAPL on host md was unable to find any NICs.
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
DAT: library load failure: /usr/lib64/libdaplcma.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplcma.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplscm.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplscm.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplscm.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplscm.so.1: undefined symbol:
dat_registry_add_provider
DAT: library load failure: /usr/lib64/libdaplcma.so.1: undefined symbol:
dat_registry_add_provider
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-cma"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-cma-1"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-mthca0-1"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-mthca0-2"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-mlx4_0-1"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-mlx4_0-2"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------

WARNING: Failed to open "OpenIB-iwarp"
[DAT_PROVIDER_NOT_FOUND:DAT_NAME_NOT_REGISTERED].
This may be a real error or it may be an invalid entry in the uDAPL
Registry which is contained in the dat.conf file. Contact your local
System Administrator to confirm the availability of the interfaces in
the dat.conf file.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
[0,1,1]: uDAPL on host md was unable to find any NICs.
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
Norm of error 0.000411674 iterations 7


Jed Brown wrote:
> Yixun Liu wrote:
>   
>> Satish Balay wrote:
>>     
>>> On Sun, 5 Jul 2009, Yixun Liu wrote:
>>>
>>>   
>>>       
>>>> I run it on my computer.
>>>>
>>>> md[/home/scratch/yixun/petsc-3.0.0-p3/src/ksp/ksp/examples/tutorials>make
>>>> ex2
>>>>
>>>> mpicc -o ex2.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -g3
>>>> -I/home/scratch/yixun/petsc-3.0.0-p3/src/dm/mesh/sieve
>>>> -I/home/scratch/yixun/petsc-3.0.0-p3/linux-gnu-c-debug/include
>>>> -I/home/scratch/yixun/petsc-3.0.0-p3/include
>>>> -I/usr/lib64/mpi/gcc/openmpi/include -I/usr/lib64/mpi/gcc/openmpi/lib64
>>>> -D__SDIR__="src/ksp/ksp/examples/tutorials/" ex2.c
>>>> mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -o ex2 ex2.o
>>>> -Wl,-rpath,/home/scratch/yixun/petsc-3.0.0-p3/linux-gnu-c-debug/lib
>>>> -L/home/scratch/yixun/petsc-3.0.0-p3/linux-gnu-c-debug/lib -lpetscksp
>>>> -lpetscdm -lpetscmat -lpetscvec -lpetsc -lX11 -llapack -lblas
>>>> -L/usr/lib64/mpi/gcc/openmpi/lib64
>>>> -L/usr/lib64/gcc/x86_64-suse-linux/4.3 -L/usr/lib64 -L/lib64
>>>> -L/usr/x86_64-suse-linux/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl
>>>> -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran
>>>> -lm -lm -L/usr/lib64/gcc/x86_64-suse-linux -L/usr/x86_64-suse-linux/bin
>>>> -L/lib -lm -lm -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s
>>>> -lpthread -ldl
>>>> /bin/rm -f ex2.o
>>>>     
>>>>         
>>> Did you install this OpenMPI - or did someone-else/sysadmin install it for you?
>>>   
>>>       
>> Sysadmin install it. They let me set LD_LIBRARY_PATH to
>> /usr/lib64/mpi/gcc/openmpi/lib64, but it still doesn't work.
>>     
>
> How about running with 'make runex2_2' or
> /usr/lib64/mpi/gcc/openmpi/bin/mpiexec?
>
> Jed
>
>