MPICH error when using petsc-3.0.0-p4
Satish Balay
balay at mcs.anl.gov
Sun Apr 12 11:13:48 CDT 2009
Yes - all includes statements in both the sourcefiles should start
with "finclude/..." [so that -Id:\cygwin\codes\petsc-3.0.0-p4 is not
needed]
And where you needed PETSC_AVOID_DECLARATIONS - you need to use the
'def.h' equivelent includes.. The def.h files have only the
declarations [so the PETSC_AVOID_DECLARATIONS flag is no longer
needed/used]. You need only the definitions in the datasection of
'module flux_area'. [All subroutines should use the regular includes]
Satish
On Mon, 13 Apr 2009, Wee-Beng TAY wrote:
> Hi Satish,
>
> I now used
>
> #include "finclude/petsc.h"
> #include "finclude/petscvec.h"
> #include "finclude/petscmat.h"
> #include "finclude/petscksp.h"
> #include "finclude/petscpc.h"
> #include "finclude/petscsys.h"
>
> for global.F and
>
> #include "finclude/petscdef.h"
> #include "finclude/petscvecdef.h"
> #include "finclude/petscmatdef.h"
> #include "finclude/petsckspdef.h"
> #include "finclude/petscpcdef.h"
>
> for flux_area.f90 and it's working now. Can you explain what's happening? Is
> this the correct way then?
>
> Thank you very much and have a nice day!
>
> Yours sincerely,
>
> Wee-Beng Tay
>
>
>
> Satish Balay wrote:
> > 2 changes you have to make for 3.0.0
> >
> > 1. "include/finclude.. -> "finclude..."
> >
> > 2. PETSC_AVOID_DECLARATIONS should be removed - and use petscdef.h
> > equivalnet files.
> > i.e
> >
> > change:
> > #define PETSC_AVOID_DECLARATIONS
> > #include "include/finclude/petsc.h"
> > #include "include/finclude/petscvec.h"
> > #include "include/finclude/petscmat.h"
> > #include "include/finclude/petscksp.h"
> > #include "include/finclude/petscpc.h"
> > #undef PETSC_AVOID_DECLARATIONS
> >
> > to:
> > #include "finclude/petscdef.h"
> > #include "finclude/petscvecdef.h"
> > #include "finclude/petscmatdef.h"
> > #include "finclude/petsckspdef.h"
> > #include "finclude/petscpcdef.h"
> >
> > Satish
> >
> > On Sun, 12 Apr 2009, Wee-Beng TAY wrote:
> >
> >
> > > Hi Satish,
> > >
> > > I am now using the PETSc ex2f example. I tried "make ex2f" and manage to
> > > build
> > > and run the file. Then I used the options as a reference for my visual
> > > fortran
> > > and it worked.
> > >
> > > The options are:
> > >
> > > /compile_only /debug:full /include:"Debug/"
> > > /include:"d:\cygwin\codes\petsc-3.0.0-p4\win32_mpi_debug\include"
> > > /include:"d:\cygwin\codes\petsc-3.0.0-p4\include"
> > > /include:"E:\cygwin\codes\MPICH\SDK\include" /nologo /threads
> > > /warn:nofileopt
> > > /module:"Debug/" /object:"Debug/" /pdbfile:"Debug/DF60.PDB" /fpp:"/m"
> > >
> > > and
> > >
> > > ws2_32.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib
> > > advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib
> > > odbccp32.lib libpetscts.lib libpetscsnes.lib libpetscksp.lib
> > > libpetscdm.lib
> > > libpetscmat.lib libpetscvec.lib libpetsc.lib mpich.lib libfblas.lib
> > > libflapack.lib /nologo /subsystem:console /incremental:yes
> > > /pdb:"Debug/ex2f.pdb" /debug /machine:I386 /out:"Debug/ex2f.exe"
> > > /pdbtype:sept
> > > /libpath:"d:\cygwin\codes\petsc-3.0.0-p4\win32_mpi_debug\lib"
> > > /libpath:"E:\cygwin\codes\MPICH\SDK\lib"
> > >
> > > Now I add my own file called global.F and tried to compile, using the same
> > > options.But now it failed. The error is:
> > >
> > > --------------------Configuration: ex2f - Win32 Debug--------------------
> > > Compiling Fortran...
> > > ------------------------------------------------------------------------
> > > D:\cygwin\codes\petsc-3.0.0-p4\projects\fortran\ksp\ex2f\global.F:
> > > 7: #include "include/finclude/petsc.h"
> > > ^
> > > ** error on line 7 in D:\cygwin\codes\pets: cannot find file specified
> > > in include directive.
> > > 8: #include "include/finclude/petscvec.h"
> > > ^
> > > ** error on line 8 in D:\cygwin\codes\pets: cannot find file specified
> > > in include directive.
> > > 9: #include "include/finclude/petscmat.h"
> > > ^
> > > ** error on line 9 in D:\cygwin\codes\pets: cannot find file specified
> > > in include directive.
> > > 10: #include "include/finclude/petscksp.h"
> > > ^
> > > ** error on line 10 in D:\cygwin\codes\pets: cannot find file
> > > specified in include directive.
> > > 11: #include "include/finclude/petscpc.h"
> > > ^
> > > ** error on line 11 in D:\cygwin\codes\pets: cannot find file
> > > specified in include directive.
> > > 12: #include "include/finclude/petscsys.h"
> > > ^
> > > ** error on line 12 in D:\cygwin\codes\pets: cannot find file
> > > specified in include directive.
> > > 97: #include "include/finclude/petsc.h"
> > > ^
> > > ** error on line 97 in D:\cygwin\codes\pets: cannot find file
> > > specified in include directive.
> > > 98: #include "include/finclude/petscvec.h"
> > > ^
> > > ** error on line 98 in D:\cygwin\codes\pets: cannot find file
> > > specified in include directive.
> > > 99: #include "include/finclude/petscmat.h"
> > > ^
> > > ** error on line 99 in D:\cygwin\codes\pets: cannot find file
> > > specified in include directive.
> > > 100: #include "include/finclude/petscksp.h"
> > > ^
> > > ** error on line 100 in D:\cygwin\codes\pets: cannot find file
> > > specified in include directive.
> > > 101: #include "include/finclude/petscpc.h"
> > > ^
> > > ** error on line 101 in D:\cygwin\codes\pets: cannot find file
> > > specified in include directive.
> > > 102: #include "include/finclude/petscsys.h"
> > > ^
> > > ** error on line 102 in D:\cygwin\codes\pets: cannot find file
> > > specified in include directive.
> > > global.i
> > > D:\cygwin\codes\petsc-3.0.0-p4\projects\fortran\ksp\ex2f\global.F(65) :
> > > Error:
> > > Syntax error, found ',' when expecting one of: ( : % . = =>
> > > Vec xx,b_rhs,xx_uv,b_rhs_uv
> > > -----------------^
> > > D:\cygwin\codes\petsc-3.0.0-p4\projects\fortran\ksp\ex2f\global.F(67) :
> > > Error:
> > > Syntax error, found ',' when expecting one of: ( : % . = =>
> > > Mat A_mat,A_mat_uv ! /* sparse matrix */
> > > --------------------^
> > > D:\cygwin\codes\petsc-3.0.0-p4\projects\fortran\ksp\ex2f\global.F(69) :
> > > Error:
> > > Syntax error, found ',' when expecting one of: ( : % . = =>
> > > KSP ksp,ksp_uv !/* linear solver context */
> > > -----------------^
> > > D:\cygwin\codes\petsc-3.0.0-p4\projects\fortran\ksp\ex2f\global.F(71) :
> > > Error:
> > > Syntax error, found ',' when expecting one of: ( : % . = =>
> > > PC pc,pc_uv
> > > ------------------^
> > > D:\cygwin\codes\petsc-3.0.0-p4\projects\fortran\ksp\ex2f\global.F(73) :
> > > Error:
> > > Syntax error, found END-OF-STATEMENT when expecting one of: ( : % . = =>
> > > PCType ptype
> > > -------------------------^
> > > D:\cygwin\codes\petsc-3.0.0-p4\projects\fortran\ksp\ex2f\global.F(75) :
> > > Error:
> > > Syntax error, found END-OF-STATEMENT when expecting one of: ( : % . = =>
> > > KSPType ksptype....
> > >
> > >
> > > I can get it to compile if I use :
> > >
> > > Debug/;d:\cygwin\codes\petsc-3.0.0-p4;d:\cygwin\codes\petsc-3.0.0-p4\include;d:\cygwin\codes\petsc-3.0.0-p4\win32_mpi_debug\include;E:\cygwin\codes\MPICH\SDK\include
> > >
> > > Compared to the original one above which is:
> > >
> > > Debug/;d:\cygwin\codes\petsc-3.0.0-p4\win32_mpi_debug\include;d:\cygwin\codes\petsc-3.0.0-p4\include;E:\cygwin\codes\MPICH\SDK\include
> > >
> > > Hence, there is an additional "d:\cygwin\codes\petsc-3.0.0-p4"
> > >
> > > I have attached my global.F. I wonder if this is the cause of the MPICH
> > > error.
> > >
> > > Currently, I have removed all other f90 files, except for global.F and
> > > flux_area.f90. It's when I 'm compiling flux_area.f90 that I got the MPI
> > > error
> > > stated below. I got the same error if I compile under cygwin using the
> > > same
> > > parameters.
> > >
> > > Hope you can help.
> > >
> > > Thank you very much and have a nice day!
> > >
> > > Yours sincerely,
> > >
> > > Wee-Beng Tay
> > >
> > >
> > >
> > > Satish Balay wrote:
> > >
> > > > Do you get these errors with PETSc f90 examples?
> > > >
> > > > what 'USE statement' do you have in your code?
> > > >
> > > > I guess you'll have to check your code to see how you are using f90
> > > > modules/includes.
> > > >
> > > > If you can get a minimal compileable code that can reproduce this
> > > > error - send us the code so that we can reproduce the issue
> > > >
> > > > Satish
> > > >
> > > > On Thu, 9 Apr 2009, Wee-Beng TAY wrote:
> > > >
> > > >
> > > > > Hi,
> > > > >
> > > > > I just built petsc-3.0.0-p4 with mpich and after that, I reinstalled
> > > > > my
> > > > > windows xp and installed mpich in the same directory. I'm using CVF
> > > > >
> > > > > Now, I found that when I'm trying to compile my code, I got the error:
> > > > >
> > > > > :\cygwin\codes\MPICH\SDK\include\mpif.h(105) : Error: The attributes
> > > > > of
> > > > > this
> > > > > name conflict with those made accessible by a USE statement.
> > > > > [MPI_STATUS_SIZE]
> > > > > INTEGER MPI_STATUS_IGNORE(MPI_STATUS_SIZE)
> > > > > --------------------------------^
> > > > > E:\cygwin\codes\MPICH\SDK\include\mpif.h(106) : Error: The attributes
> > > > > of
> > > > > this
> > > > > name conflict with those made accessible by a USE statement.
> > > > > [MPI_STATUS_SIZE]
> > > > > INTEGER MPI_STATUSES_IGNORE(MPI_STATUS_SIZE)
> > > > > ----------------------------------^
> > > > > E:\cygwin\codes\petsc-3.0.0-p4\include/finclude/petsc.h(154) : Error:
> > > > > The
> > > > > attributes of this name conflict with those made accessible by a USE
> > > > > statement. [MPI_DOUBLE_PRECISION]
> > > > > parameter(MPIU_SCALAR = MPI_DOUBLE_PRECISION)
> > > > > ------------------------------^
> > > > > Error executing df.exe.
> > > > >
> > > > > flux_area.obj - 3 error(s), 0 warning(s)
> > > > >
> > > > > My include option is :
> > > > >
> > > > > Debug/;$(PETSC_DIR);$(PETSC_DIR)\$(PETSC_ARCH)\;$(PETSC_DIR)\$(PETSC_ARCH)\include;$(PETSC_DIR)\include;E:\cygwin\codes\MPICH\SDK\include
> > > > >
> > > > >
> > > > > Interestingly, when I change my PETSC_DIR to petsc-dev, which
> > > > > correspond
> > > > > to an
> > > > > old build of petsc-2.3.3-p13, there is no problem.
> > > > >
> > > > > May I know what's wrong? Btw, I've converted my mpif.h from using "C"
> > > > > as
> > > > > comments to "!".
> > > > >
> > > > > Thank you very much and have a nice day!
> > > > >
> > > > > Yours sincerely,
> > > > >
> > > > > Wee-Beng Tay
> > > > >
> > > > >
> > > > >
> > > >
> >
> >
> >
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