How to efficiently change just the diagonal vector in a matrix at every time step
Ben Tay
zonexo at gmail.com
Sat May 10 03:38:30 CDT 2008
Hi Sean,
Maybe for me, I can just insert vector diagonal D into the matrix A and call
Assembly and KSP at every time step. Should that be better since there is no
need to copy A into B?
Thanks!
On Fri, May 9, 2008 at 8:50 PM, Sean Dettrick <sdettrick at gmail.com> wrote:
>
> One way to do it is to have two Mats, A and B, and a Vec, D, to store the
> diagonal. A is constructed only on the first step. On subsequent steps, A
> is copied into B, and then D is added to the diagonal:
>
> ierr = MatCopy( A, B, SAME_NON_ZERO_PATTERN );
> ierr = MatDiagonalSet( B, D, ADD_VALUES );
>
> The KSP uses B as the matrix, not A.
>
> I don't know if this approach is efficient or not. Can anybody comment?
>
> Thanks,
> Sean
>
>
>
>
> On May 9, 2008, at 2:33 PM, Ben Tay wrote:
>
> Hi,
>> I have a matrix and I inserted all the relevant values during the 1st
>> step. I'll then solve it. For the subsequent steps, I only need to change
>> the diagonal vector of the matrix before solving. I wonder how I can do it
>> efficiently. Of course, the RHS vector also change but I've not included
>> them here.
>>
>> I set these at the 1st step:
>>
>> call
>> KSPSetOperators(ksp_semi_x,A_semi_x,A_semi_x,SAME_NONZERO_PATTERN,ierr)
>>
>> call KSPGetPC(ksp_semi_x,pc_semi_x,ierr)
>>
>> ksptype=KSPRICHARDSON
>>
>> call KSPSetType(ksp_semi_x,ksptype,ierr)
>>
>> ptype = PCILU
>>
>> call PCSetType(pc_semi_x,ptype,ierr)
>>
>> call KSPSetFromOptions(ksp_semi_x,ierr)
>>
>> call KSPSetInitialGuessNonzero(ksp_semi_x,PETSC_TRUE,ierr)
>>
>> tol=1.e-5
>>
>> call
>> KSPSetTolerances(ksp_semi_x,tol,PETSC_DEFAULT_DOUBLE_PRECISION,PETSC_DEFAULT_DOUBLE_PRECISION,PETSC_DEFAULT_INTEGER,ierr)
>>
>> and what I did at the subsequent steps is:
>>
>> do II=1,total
>> call MatSetValues(A_semi_x,1,II,1,II,new_value,INSERT_VALUES,ierr)
>>
>> end do
>>
>> call MatAssemblyBegin(A_semi_x,MAT_FINAL_ASSEMBLY,ierr)
>>
>> call MatAssemblyEnd(A_semi_x,MAT_FINAL_ASSEMBLY,ierr)
>>
>> call KSPSolve(ksp_semi_x,b_rhs_semi_x,xx_semi_x,ierr)
>>
>> I realise that the answers are slightly different as compared to calling
>> all the options such as KSPSetType, KSPSetFromOptions, KSPSetTolerances at
>> every time step. Should that be so? Is this the best way?
>>
>> Also, I can let the matrix be equal at every time step by fixing the
>> delta_time. However, it may give stability problems. I wonder how expensive
>> is these type of value changing and assembly for a matrix?
>>
>> Thank you very much.
>>
>> Regards.
>>
>>
>
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