how to add a parallel MatMatSolve() function?

[Yujie]

Dear Barry:

the following is the compiled errors:

/home/yujie/mpich127/bin/mpicxx -o matrix.o -c -Wall -Wwrite-strings -g
-fPIC -I/home/yujie/codes/petsc-2.3.3-p8
-I/home/yujie/codes/petsc-2.3.3-p8/bmake/linux
-I/home/yujie/codes/petsc-2.3.3-p8/include -I/home/yujie/codes/petsc-
2.3.3-p8/externalpackages/spooles-2.2/linux/ -I/home/yujie/mpich127/include
-I/usr/X11R6/include -D__SDIR__='"src/mat/interface/"' matrix.c
matrix.c: In function `PetscErrorCode MatMatSolve_Basic(_p_Mat*, _p_Mat*,
_p_Mat*)':
matrix.c:2531: `struct _p_Mat' has no member named `hdr'
matrix.c:2532: `struct _p_Mat' has no member named `hdr'
matrix.c:2588:41: warning: multi-line string literals are deprecated
matrix.c:2590:52: warning: multi-line string literals are deprecated
matrix.c:2592:58: warning: multi-line string literals are deprecated
matrix.c:2594:58: warning: multi-line string literals are deprecated
matrix.c:2596:58: warning: multi-line string literals are deprecated
make[1]: [/home/yujie/codes/petsc-2.3.3-p8/lib/linux/libpetscmat.a(matrix.o)]
Error 1 (ignored)
/usr/bin/ar cr /home/yujie/codes/petsc-2.3.3-p8/lib/linux/libpetscmat.a
matrix.o
/usr/bin/ar: matrix.o: No such file or directory
make[1]: [/home/yujie/codes/petsc-2.3.3-p8/lib/linux/libpetscmat.a(matrix.o)]
Error 1 (ignored)
if test -n ""; then /usr/bin/ar cr matrix.lo; fi
/bin/rm -f matrix.o matrix.lo
making shared libraries in /home/yujie/codes/petsc-2.3.3-p8/lib/linux
building libpetscmat.so

thanks,
Yujie

On 2/29/08, Barry Smith <bsmith at mcs.anl.gov> wrote:
>
>
>    Please edit the file src/mat/interface/matrix.c and remove the
> function MatMatSolve(). Replace it with the following two functions,
> then run "make lib shared" in that directory. Please let us know at
> petsc-maint at mcs.anl.gov
>   if it crashes or produces incorrect
> results.
>
>     Barry
>
>
>
> #undef __FUNCT__
> #define __FUNCT__ "MatMatSolve_Basic"
> PetscErrorCode PETSCMAT_DLLEXPORT MatMatSolve_Basic(Mat A,Mat B,Mat X)
> {
>    PetscErrorCode ierr;
>    Vec            b,x;
>    PetscInt       m,N,i;
>    PetscScalar    *bb,*xx;
>
>    PetscFunctionBegin;
>    ierr = MatGetArray(B,&bb);CHKERRQ(ierr);
>    ierr = MatGetArray(X,&xx);CHKERRQ(ierr);
>    ierr = MatGetLocalSize(B,&m,PETSC_NULL);CHKERRQ(ierr);  /* number
> local rows */
>    ierr = MatGetSize(B,PETSC_NULL,&N);CHKERRQ(ierr);       /* total
> columns in dense matrix */
>    ierr = VecCreateMPIWithArray(A-
>   >hdr.comm,m,PETSC_DETERMINE,PETSC_NULL,&b);CHKERRQ(ierr);
>    ierr = VecCreateMPIWithArray(A-
>   >hdr.comm,m,PETSC_DETERMINE,PETSC_NULL,&x);CHKERRQ(ierr);
>    for (i=0; i<N; i++) {
>      ierr = VecPlaceArray(b,bb + i*m);CHKERRQ(ierr);
>      ierr = VecPlaceArray(x,xx + i*m);CHKERRQ(ierr);
>      ierr = MatSolve(A,b,x);CHKERRQ(ierr);
>    }
>    ierr = VecDestroy(b);CHKERRQ(ierr);
>    ierr = VecDestroy(x);CHKERRQ(ierr);
>    PetscFunctionReturn(0);
> }
>
> #undef __FUNCT__
> #define __FUNCT__ "MatMatSolve"
> /*@
>     MatMatSolve - Solves A X = B, given a factored matrix.
>
>     Collective on Mat
>
>     Input Parameters:
> +  mat - the factored matrix
> -  B - the right-hand-side matrix  (dense matrix)
>
>     Output Parameter:
> .  B - the result matrix (dense matrix)
>
>     Notes:
>     The matrices b and x cannot be the same.  I.e., one cannot
>     call MatMatSolve(A,x,x).
>
>     Notes:
>     Most users should usually employ the simplified KSP interface for
> linear solvers
>     instead of working directly with matrix algebra routines such as
> this.
>     See, e.g., KSPCreate(). However KSP can only solve for one vector
> (column of X)
>     at a time.
>
>     Level: developer
>
>     Concepts: matrices^triangular solves
>
> .seealso: MatMatSolveAdd(), MatMatSolveTranspose(),
> MatMatSolveTransposeAdd(), MatLUFactor(), MatCholeskyFactor()
> @*/
> PetscErrorCode PETSCMAT_DLLEXPORT MatMatSolve(Mat A,Mat B,Mat X)
> {
>    PetscErrorCode ierr;
>
>    PetscFunctionBegin;
>    PetscValidHeaderSpecific(A,MAT_COOKIE,1);
>    PetscValidType(A,1);
>    PetscValidHeaderSpecific(B,MAT_COOKIE,2);
>    PetscValidHeaderSpecific(X,MAT_COOKIE,3);
>    PetscCheckSameComm(A,1,B,2);
>    PetscCheckSameComm(A,1,X,3);
>    if (X == B) SETERRQ(PETSC_ERR_ARG_IDN,"X and B must be different
> matrices");
>    if (!A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Unfactored
> matrix");
>    if (A->cmap.N != X->rmap.N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Mat A,Mat
> X: global dim %D %D",A->cmap.N,X->rmap.N);
>    if (A->rmap.N != B->rmap.N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Mat A,Mat
> B: global dim %D %D",A->rmap.N,B->rmap.N);
>    if (A->rmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"Mat A,Mat
> B: local dim %D %D",A->rmap.n,B->rmap.n);
>    if (!A->rmap.N && !A->cmap.N) PetscFunctionReturn(0);
>    ierr = MatPreallocated(A);CHKERRQ(ierr);
>
>    ierr = PetscLogEventBegin(MAT_MatSolve,A,B,X,0);CHKERRQ(ierr);
>    if (!A->ops->matsolve) {
>      ierr = PetscInfo1(A,"Mat type %s using basic MatMatSolve",
> ((PetscObject)A)->type_name);CHKERRQ(ierr);
>      ierr = MatMatSolve_Basic(A,B,X);CHKERRQ(ierr);
>    } else {
>      ierr = (*A->ops->matsolve)(A,B,X);CHKERRQ(ierr);
>    }
>    ierr = PetscLogEventEnd(MAT_MatSolve,A,B,X,0);CHKERRQ(ierr);
>    ierr = PetscObjectStateIncrease((PetscObject)X);CHKERRQ(ierr);
>    PetscFunctionReturn(0);
>
> }
>
> On Feb 29, 2008, at 6:46 PM, Yujie wrote:
>
> > Hi, everyone
> >
> > I am considering to add a parallel MatMatSolve() into PETSc based on
> > SuperLu_DIST or Spooles. If I want to use it like current sequential
> > MatMatSolve() in the application codes, how to do it? Could you give
> > me some examples about how to add a new function?
> > thanks a lot.
> >
> > Regards,
> > Yujie
>
>
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