[petsc-dev] Cannot locate file: share/petsc/datafiles/matrices/small

Tue Sep 14 09:54:14 CDT 2021

Without a standalone & valid mpi example to reproduce the error, we are not
assured to say it is an OpenMPI bug.

--Junchao Zhang

On Tue, Sep 14, 2021 at 6:17 AM Matthew Knepley <knepley at gmail.com> wrote:

> Okay, we have to send this to OpenMPI. Volunteers?
>
> Maybe we should note this in the FAQ, or installation, so we remember how
> to fix it if someone else asks?
>
>   Thanks,
>
>      Matt
>
> On Tue, Sep 14, 2021 at 2:35 AM Stefano Zampini <stefano.zampini at gmail.com>
> wrote:
>
>> I can reproduce it even with OpenMPI 4.1.1 on a different machine (Ubuntu
>> 18 + AMD milan + clang from AOCC)  and it is definitely an OpenMPI bug in
>> the vader BTL If I use tcp, everything runs smooth
>>
>> zampins at kanary:~/Devel/petsc$ cat
>> /home/zampins/local/etc/openmpi-mca-params.conf | grep btl
>> btl = tcp,self
>> zampins at kanary:~/Devel/petsc$ make -f gmakefile.test
>> vec_is_sf_tutorials-ex1_4
>> Using MAKEFLAGS:
>>         TEST arch-debug/tests/counts/vec_is_sf_tutorials-ex1_4.counts
>>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
>>  ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
>>  ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
>>  ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create
>>  ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic
>>  ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
>>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
>>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
>>  ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
>>
>>
>> zampins at kanary:~/Devel/petsc$ cat
>> /home/zampins/local/etc/openmpi-mca-params.conf | grep btl
>> btl = vader,tcp,self
>> zampins at kanary:~/Devel/petsc$ make -f gmakefile.test
>> vec_is_sf_tutorials-ex1_4
>> Using MAKEFLAGS:
>>         TEST arch-debug/tests/counts/vec_is_sf_tutorials-ex1_4.counts
>>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
>> not ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
>> # Error code: 1
>> # 43,46c43,46
>> # < [0] 0: 4001 2000 2002 3002 4002
>> # < [1] 0: 1001 3000
>> # < [2] 0: 2001 4000
>> # < [3] 0: 3001 1000
>> # ---
>> # > [0] 0: 2002 2146435072 2 2146435072 38736240
>> # > [1] 0: 3000 2146435072
>> # > [2] 0: 2001 2146435072
>> # > [3] 0: 3001 2146435072
>>  ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
>> not ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
>> # Error code: 1
>> # 43,46c43,46
>> # < [0] 0: 4001 2000 2002 3002 4002
>> # < [1] 0: 1001 3000
>> # < [2] 0: 2001 4000
>> # < [3] 0: 3001 1000
>> # ---
>> # > [0] 0: 2002 2146435072 2 2146435072 0
>> # > [1] 0: 3000 2146435072
>> # > [2] 0: 2001 2146435072
>> # > [3] 0: 3001 2146435072
>>  ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
>> # retrying
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create
>> not ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create #
>> Error code: 98
>> # [1]PETSC ERROR: --------------------- Error Message
>> --------------------------------------------------------------
>> # [1]PETSC ERROR: General MPI error
>> # [1]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
>> # [1]PETSC ERROR: See https://petsc.org/release/faq/ for trouble
>> shooting.
>> # [1]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>>  GIT Date: 2021-09-13 14:01:22 +0000
>> # [1]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
>> zampins Tue Sep 14 09:31:42 2021
>> # [1]PETSC ERROR: [2]PETSC ERROR: --------------------- Error Message
>> --------------------------------------------------------------
>> # [2]PETSC ERROR: General MPI error
>> # [2]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
>> # [2]PETSC ERROR: See https://petsc.org/release/faq/ for trouble
>> shooting.
>> # [2]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>>  GIT Date: 2021-09-13 14:01:22 +0000
>> # [2]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
>> zampins Tue Sep 14 09:31:42 2021
>> # [2]PETSC ERROR: Configure options
>> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
>> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
>> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
>> --with-hip-dir=/opt/rocm --with-hip=1
>> --with-hypre-dir=/home/zampins/local-petsc
>> --with-kokkos-dir=/home/zampins/local-petsc
>> --with-kokkos-kernels-dir=/home/zampins/local-petsc
>> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
>> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
>> HIPFLAGS=--amdgpu-target=gfx908
>> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
>> # [2]PETSC ERROR: #1 PetscSFGetGroups() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
>> # [2]PETSC ERROR: #2 PetscSFSetUp_Window() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
>> # [2]PETSC ERROR: #3 PetscSFSetUp() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
>> # [2]PETSC ERROR: #4 main() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
>> # [2]PETSC ERROR: PETSc Option Table entries:
>> # [2]PETSC ERROR: -sf_type window
>> # [2]PETSC ERROR: -sf_window_flavor create
>> # [2]PETSC ERROR: -sf_window_sync active
>> # [2]PETSC ERROR: -test_gather
>> # [2]PETSC ERROR: ----------------End of Error Message -------send entire
>> error message to petsc-maint at mcs.anl.gov----------
>> # [3]PETSC ERROR: --------------------- Error Message
>> --------------------------------------------------------------
>> # [3]PETSC ERROR: General MPI error
>> # [3]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
>> # [3]PETSC ERROR: See https://petsc.org/release/faq/ for trouble
>> shooting.
>> # [3]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>>  GIT Date: 2021-09-13 14:01:22 +0000
>> # [3]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
>> zampins Tue Sep 14 09:31:42 2021
>> # [3]PETSC ERROR: Configure options
>> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
>> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
>> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
>> --with-hip-dir=/opt/rocm --with-hip=1
>> --with-hypre-dir=/home/zampins/local-petsc
>> --with-kokkos-dir=/home/zampins/local-petsc
>> --with-kokkos-kernels-dir=/home/zampins/local-petsc
>> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
>> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
>> HIPFLAGS=--amdgpu-target=gfx908
>> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
>> # [3]PETSC ERROR: #1 PetscSFGetGroups() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
>> # [3]PETSC ERROR: #2 PetscSFSetUp_Window() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
>> # [3]PETSC ERROR: #3 PetscSFSetUp() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
>> # [3]PETSC ERROR: #4 main() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
>> # [3]PETSC ERROR: PETSc Option Table entries:
>> # [3]PETSC ERROR: -sf_type window
>> # [3]PETSC ERROR: -sf_window_flavor create
>> # [3]PETSC ERROR: Configure options
>> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
>> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
>> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
>> --with-hip-dir=/opt/rocm --with-hip=1
>> --with-hypre-dir=/home/zampins/local-petsc
>> --with-kokkos-dir=/home/zampins/local-petsc
>> --with-kokkos-kernels-dir=/home/zampins/local-petsc
>> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
>> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
>> HIPFLAGS=--amdgpu-target=gfx908
>> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
>> # [1]PETSC ERROR: #1 PetscSFGetGroups() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
>> # [1]PETSC ERROR: #2 PetscSFSetUp_Window() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
>> # [1]PETSC ERROR: #3 PetscSFSetUp() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
>> # [1]PETSC ERROR: #4 main() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
>> # [1]PETSC ERROR: PETSc Option Table entries:
>> # [1]PETSC ERROR: -sf_type window
>> # [1]PETSC ERROR: -sf_window_flavor create
>> # [1]PETSC ERROR: -sf_window_sync active
>> # [1]PETSC ERROR: -test_gather
>> # [1]PETSC ERROR: ----------------End of Error Message -------send entire
>> error message to petsc-maint at mcs.anl.gov----------
>> # -sf_window_sync active
>> # [3]PETSC ERROR: -test_gather
>> # [3]PETSC ERROR: ----------------End of Error Message -------send entire
>> error message to petsc-maint at mcs.anl.gov----------
>> #
>> --------------------------------------------------------------------------
>> # MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD
>> # with errorcode 98.
>> #
>> # NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
>> # You may or may not see output from other processes, depending on
>> # exactly when Open MPI kills them.
>> #
>> --------------------------------------------------------------------------
>> # [kanary.kaust.edu.sa:115527] 2 more processes have sent help message
>> help-mpi-api.txt / mpi-abort
>> # [kanary.kaust.edu.sa:115527] Set MCA parameter
>> "orte_base_help_aggregate" to 0 to see all help / error messages
>>  ok vec_is_sf_tutorials-ex1_4 # SKIP Command failed so no diff
>> # retrying
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic
>> not ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic #
>> Error code: 98
>> # [1]PETSC ERROR: --------------------- Error Message
>> --------------------------------------------------------------
>> # [1]PETSC ERROR: General MPI error
>> # [1]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
>> # [1]PETSC ERROR: See https://petsc.org/release/faq/ for trouble
>> shooting.
>> # [1]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>>  GIT Date: 2021-09-13 14:01:22 +0000
>> # [1]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
>> zampins Tue Sep 14 09:31:45 2021
>> # [1]PETSC ERROR: Configure options
>> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
>> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
>> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
>> --with-hip-dir=/opt/rocm --with-hip=1
>> --with-hypre-dir=/home/zampins/local-petsc
>> --with-kokkos-dir=/home/zampins/local-petsc
>> --with-kokkos-kernels-dir=/home/zampins/local-petsc
>> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
>> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
>> HIPFLAGS=--amdgpu-target=gfx908
>> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
>> # [1]PETSC ERROR: #1 PetscSFGetGroups() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
>> # [1]PETSC ERROR: #2 PetscSFSetUp_Window() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
>> # [1]PETSC ERROR: #3 PetscSFSetUp() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
>> # [1]PETSC ERROR: #4 main() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
>> # [1]PETSC ERROR: PETSc Option Table entries:
>> # [1]PETSC ERROR: -sf_type window
>> # [1]PETSC ERROR: [2]PETSC ERROR: --------------------- Error Message
>> --------------------------------------------------------------
>> # [2]PETSC ERROR: General MPI error
>> # [2]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
>> # [2]PETSC ERROR: See https://petsc.org/release/faq/ for trouble
>> shooting.
>> # [2]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>>  GIT Date: 2021-09-13 14:01:22 +0000
>> # [2]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
>> zampins Tue Sep 14 09:31:45 2021
>> # [2]PETSC ERROR: Configure options
>> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
>> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
>> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
>> --with-hip-dir=/opt/rocm --with-hip=1
>> --with-hypre-dir=/home/zampins/local-petsc
>> --with-kokkos-dir=/home/zampins/local-petsc
>> --with-kokkos-kernels-dir=/home/zampins/local-petsc
>> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
>> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
>> HIPFLAGS=--amdgpu-target=gfx908
>> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
>> # [2]PETSC ERROR: #1 PetscSFGetGroups() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
>> # [2]PETSC ERROR: #2 PetscSFSetUp_Window() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
>> # [2]PETSC ERROR: #3 PetscSFSetUp() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
>> # [2]PETSC ERROR: #4 main() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
>> # [2]PETSC ERROR: PETSc Option Table entries:
>> # [2]PETSC ERROR: -sf_type window
>> # [2]PETSC ERROR: -sf_window_flavor dynamic
>> # [2]PETSC ERROR: -sf_window_sync active
>> # [2]PETSC ERROR: -test_gather
>> # [2]PETSC ERROR: ----------------End of Error Message -------send entire
>> error message to petsc-maint at mcs.anl.gov----------
>> # [3]PETSC ERROR: --------------------- Error Message
>> --------------------------------------------------------------
>> # [3]PETSC ERROR: General MPI error
>> # [3]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
>> # [3]PETSC ERROR: See https://petsc.org/release/faq/ for trouble
>> shooting.
>> # [3]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>>  GIT Date: 2021-09-13 14:01:22 +0000
>> # [3]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
>> zampins Tue Sep 14 09:31:45 2021
>> # [3]PETSC ERROR: Configure options
>> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
>> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
>> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
>> --with-hip-dir=/opt/rocm --with-hip=1
>> --with-hypre-dir=/home/zampins/local-petsc
>> --with-kokkos-dir=/home/zampins/local-petsc
>> --with-kokkos-kernels-dir=/home/zampins/local-petsc
>> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
>> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
>> HIPFLAGS=--amdgpu-target=gfx908
>> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
>> # [3]PETSC ERROR: #1 PetscSFGetGroups() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
>> # [3]PETSC ERROR: #2 PetscSFSetUp_Window() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
>> # [3]PETSC ERROR: #3 PetscSFSetUp() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
>> # [3]PETSC ERROR: #4 main() at
>> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
>> # [3]PETSC ERROR: PETSc Option Table entries:
>> # [3]PETSC ERROR: -sf_type window
>> # [3]PETSC ERROR: -sf_window_flavor dynamic
>> # [3]PETSC ERROR: -sf_window_sync active
>> # [3]PETSC ERROR: -test_gather
>> # [3]PETSC ERROR: ----------------End of Error Message -------send entire
>> error message to petsc-maint at mcs.anl.gov----------
>> # -sf_window_flavor dynamic
>> # [1]PETSC ERROR: -sf_window_sync active
>> # [1]PETSC ERROR: -test_gather
>> # [1]PETSC ERROR: ----------------End of Error Message -------send entire
>> error message to petsc-maint at mcs.anl.gov----------
>> #
>> --------------------------------------------------------------------------
>> # MPI_ABORT was invoked on rank 3 in communicator MPI_COMM_WORLD
>> # with errorcode 98.
>> #
>> # NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
>> # You may or may not see output from other processes, depending on
>> # exactly when Open MPI kills them.
>> #
>> --------------------------------------------------------------------------
>> # [kanary.kaust.edu.sa:115572] 2 more processes have sent help message
>> help-mpi-api.txt / mpi-abort
>> # [kanary.kaust.edu.sa:115572] Set MCA parameter
>> "orte_base_help_aggregate" to 0 to see all help / error messages
>>  ok vec_is_sf_tutorials-ex1_4 # SKIP Command failed so no diff
>>  ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
>>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
>> not ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
>> # Error code: 1
>> # 43,46c43,46
>> # < [0] 0: 4001 2000 2002 3002 4002
>> # < [1] 0: 1001 3000
>> # < [2] 0: 2001 4000
>> # < [3] 0: 3001 1000
>> # ---
>> # > [0] 0: 4002 2146435072 2 2146435072 34619728
>> # > [1] 0: 3000 2146435072
>> # > [2] 0: 4000 2146435072
>> # > [3] 0: 3001 2146435072
>>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
>> not ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
>> # Error code: 1
>> # 43,46c43,46
>> # < [0] 0: 4001 2000 2002 3002 4002
>> # < [1] 0: 1001 3000
>> # < [2] 0: 2001 4000
>> # < [3] 0: 3001 1000
>> # ---
>> # > [0] 0: 4002 2146435072 2 2146435072 0
>> # > [1] 0: 3000 2146435072
>> # > [2] 0: 4000 2146435072
>> # > [3] 0: 3001 2146435072
>>  ok
>> vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
>>  ok
>> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
>>
>>
>>
>> Il giorno mar 14 set 2021 alle ore 07:44 Stefano Zampini <
>> stefano.zampini at gmail.com> ha scritto:
>>
>>> I'll see if I can reproduce
>>>
>>> Il Mar 14 Set 2021, 06:58 Junchao Zhang <junchao.zhang at gmail.com> ha
>>> scritto:
>>>
>>>> Hi, Stefano,
>>>>    Ping you again to see if you want to resolve this problem before
>>>> petsc-3.16
>>>>
>>>> --Junchao Zhang
>>>>
>>>>
>>>> On Sun, Sep 12, 2021 at 3:06 PM Antonio T. sagitter <
>>>> sagitter at fedoraproject.org> wrote:
>>>>
>>>>> Unfortunately, it's not possible. I must use the OpenMPI provided by
>>>>> Fedora build-system (these rpm builds of PETSc are for Fedora's
>>>>> repositories), downloading external software is not permitted.
>>>>>
>>>>> On 9/12/21 21:10, Pierre Jolivet wrote:
>>>>> >
>>>>> >> On 12 Sep 2021, at 8:56 PM, Matthew Knepley <knepley at gmail.com
>>>>> >> <mailto:knepley at gmail.com>> wrote:
>>>>> >>
>>>>> >> On Sun, Sep 12, 2021 at 2:49 PM Antonio T. sagitter
>>>>> >> <sagitter at fedoraproject.org <mailto:sagitter at fedoraproject.org>>
>>>>> wrote:
>>>>> >>
>>>>> >>     Those attached are configure.log/make.log from a MPI build in
>>>>> >>     Fedora 34
>>>>> >>     x86_64 where the error below occurred.
>>>>> >>
>>>>> >>
>>>>> >> This is OpenMPI 4.1.0. Is that the only MPI you build? My first
>>>>> >> inclination is that this is an MPI implementation bug.
>>>>> >>
>>>>> >> Junchao, do we have an OpenMPI build in the CI?
>>>>> >
>>>>> > config/examples/arch-ci-linux-cuda-double-64idx.py:
>>>>> >   '--download-openmpi=1',
>>>>> > config/examples/arch-ci-linux-pkgs-dbg-ftn-interfaces.py:
>>>>> >   '--download-openmpi=1',
>>>>> > config/examples/arch-ci-linux-pkgs-opt.py:  '--download-openmpi=1',
>>>>> >
>>>>> > config/BuildSystem/config/packages/OpenMPI.py uses version 4.1.0 as
>>>>> well.
>>>>> > I’m not sure PETSc is to blame here Antonio. You may want to try to
>>>>> > ditch the OpenMPI shipped by your packet manager and try
>>>>> > --download-openmpi as well, just for a quick sanity check.
>>>>> >
>>>>> > Thanks,
>>>>> > Pierre
>>>>> >
>>>>>
>>>>> --
>>>>> ---
>>>>> Antonio Trande
>>>>> Fedora Project
>>>>> mailto: sagitter at fedoraproject.org
>>>>> GPG key: 0x29FBC85D7A51CC2F
>>>>> GPG key server: https://keyserver1.pgp.com/
>>>>>
>>>>
>>
>> --
>> Stefano
>>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
> https://www.cse.buffalo.edu/~knepley/
> <http://www.cse.buffalo.edu/~knepley/>
>
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