[petsc-dev] Cannot locate file: share/petsc/datafiles/matrices/small

[Matthew Knepley]

On Sun, Sep 12, 2021 at 2:49 PM Antonio T. sagitter <
sagitter at fedoraproject.org> wrote:

> Those attached are configure.log/make.log from a MPI build in Fedora 34
> x86_64 where the error below occurred.
>

This is OpenMPI 4.1.0. Is that the only MPI you build? My first inclination
is that this is an MPI implementation bug.

Junchao, do we have an OpenMPI build in the CI?

  Thanks,

     Matt


> On 9/12/21 19:18, Antonio T. sagitter wrote:
> > Okay. I will try to set correctly the DATAFILESPATH options.
> >
> > I see even this error:
> >
> > not ok
> > vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create #
> > Error code: 68
> >
> > #    PetscSF Object: 4 MPI processes
> >
> > #      type: window
> >
> > #      [0] Number of roots=3, leaves=2, remote ranks=2
> >
> > #      [0] 0 <- (3,1)
> >
> > #      [0] 1 <- (1,0)
> >
> > #      [1] Number of roots=2, leaves=3, remote ranks=2
> >
> > #      [1] 0 <- (0,1)
> >
> > #      [1] 1 <- (2,0)
> >
> > #      [1] 2 <- (0,2)
> >
> > #      [2] Number of roots=2, leaves=3, remote ranks=3
> >
> > #      [2] 0 <- (1,1)
> >
> > #      [2] 1 <- (3,0)
> >
> > #      [2] 2 <- (0,2)
> >
> > #      [3] Number of roots=2, leaves=3, remote ranks=2
> >
> > #      [3] 0 <- (2,1)
> >
> > #      [3] 1 <- (0,0)
> >
> > #      [3] 2 <- (0,2)
> >
> > #      [0] Roots referenced by my leaves, by rank
> >
> > #      [0] 1: 1 edges
> >
> > #      [0]    1 <- 0
> >
> > #      [0] 3: 1 edges
> >
> > #      [0]    0 <- 1
> >
> > #      [1] Roots referenced by my leaves, by rank
> >
> > #      [1] 0: 2 edges
> >
> > #      [1]    0 <- 1
> >
> > #      [1]    2 <- 2
> >
> > #      [1] 2: 1 edges
> >
> > #      [1]    1 <- 0
> >
> > #      [2] Roots referenced by my leaves, by rank
> >
> > #      [2] 0: 1 edges
> >
> > #      [2]    2 <- 2
> >
> > #      [2] 1: 1 edges
> >
> > #      [2]    0 <- 1
> >
> > #      [2] 3: 1 edges
> >
> > #      [2]    1 <- 0
> >
> > #      [3] Roots referenced by my leaves, by rank
> >
> > #      [3] 0: 2 edges
> >
> > #      [3]    1 <- 0
> >
> > #      [3]    2 <- 2
> >
> > #      [3] 2: 1 edges
> >
> > #      [3]    0 <- 1
> >
> > #      current flavor=CREATE synchronization=FENCE MultiSF
> sort=rank-order
> >
> > #        current info=MPI_INFO_NULL
> >
> > #    [buildhw-x86-09:1135574] *** An error occurred in MPI_Accumulate
> >
> > #    [buildhw-x86-09:1135574] *** reported by process [3562602497,3]
> >
> > #    [buildhw-x86-09:1135574] *** on win rdma window 4
> >
> > #    [buildhw-x86-09:1135574] *** MPI_ERR_RMA_RANGE: invalid RMA address
> > range
> >
> > #    [buildhw-x86-09:1135574] *** MPI_ERRORS_ARE_FATAL (processes in
> > this win will now abort,
> >
> > #    [buildhw-x86-09:1135574] ***    and potentially your MPI job)
> >
> > #    [buildhw-x86-09.iad2.fedoraproject.org:1135567] 3 more processes
> > have sent help message help-mpi-errors.txt / mpi_errors_are_fatal
> >
> > #    [buildhw-x86-09.iad2.fedoraproject.org:1135567] Set MCA parameter
> > "orte_base_help_aggregate" to 0 to see all help / error messages
> >
> > Looks like an error related to OpenMPI-4*:
> > https://github.com/open-mpi/ompi/issues/6374
> >
>
> --
> ---
> Antonio Trande
> Fedora Project
> mailto: sagitter at fedoraproject.org
> GPG key: 0x29FBC85D7A51CC2F
> GPG key server: https://keyserver1.pgp.com/



-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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