[petsc-dev] Kokkos make error on Spock
Scott Kruger
kruger at txcorp.com
Tue Jul 20 13:17:05 CDT 2021
Cray puts the runtime somewhere and then uses their library to put it
in.
I should have mentioned this earlier, but we have
config/examples/arch-olcf-frontier-hip-beta.py
for trying to keep up with Cray's default hip, but I think it's
different than what Junchao does for Kokkos which is why I didn't
mention it earlier.
Scott
On 2021-07-20 11:26, Mark Adams did write:
> OK, it looks like this flag caused the problem and does not seem to be
> necessary:
>
> '--LDFLAGS=-L'+os.environ['ROCM_PATH']+'/lib -lhsa-runtime64',
>
> On Tue, Jul 20, 2021 at 9:00 AM Mark Adams <mfadams at lbl.gov> wrote:
>
> >
> >
> > On Mon, Jul 19, 2021 at 6:41 PM Scott Kruger <kruger at txcorp.com> wrote:
> >
> >>
> >> Mark,
> >>
> >> On tulip, things with fortran went wonky when a `-fast` flag snuck into
> >> the flags (snuck in being me copying a previous configure file and not
> >> questioning the flags). The reason is that for clang, `-fast` implies
> >> link time optimization (lto) for C/C++ code, but flang doesn't support
> >> lto so things got weird. I suspect that gfortran does not either (but
> >> perhaps the real question is why not use flang?)
> >>
> >
> > It does work with GNU. I am doing this for an application and I want to
> > avoid dictating the program env.
> >
> > I'm (re)trying with -O0 just to check.
> >
> >
> >>
> >> I look at configure and I don't see anything in your flags that would
> >> trigger lto, but as Junchao says, it might be picking something up from
> >> Kokkos, so perhaps this is the issue.
> >>
> >>
> > The configure files that I sent did not have Kokkos. They were stripped
> > down.
> >
> > I have asked ORNL, but don't expect help.
> > The person (Matt) that is helping me for other things is very helpful so
> > perhaps he can come up with some ideas.
> > Otherwise I will tell the app that they need to use GNU for now.
> >
> > Thanks,
> > Mark
> >
> >
> >
> >> Scott
> >>
> >>
> >> On 2021-07-19 07:19, Mark Adams did write:
> >> > Thanks, but this happens w/o Kokkos.
> >> > I've stripped this down and attached good/bad logs without/with Fortran
> >> > bindings.
> >> > Hope this helps,
> >> > Thanks again,
> >> > Mark
> >> >
> >> > On Sun, Jul 18, 2021 at 12:00 PM Stefano Zampini <
> >> stefano.zampini at gmail.com>
> >> > wrote:
> >> >
> >> > > This is probably kokkos pulling in the dependencies where compiling
> >> kokkos
> >> > > source within PETSc.
> >> > >
> >> > > Il Dom 18 Lug 2021, 16:29 Mark Adams <mfadams at lbl.gov> ha scritto:
> >> > >
> >> > >> Whoops, this error was just from not telling gfortran to allow long
> >> lines.
> >> > >>
> >> > >> Anway, I did find that the when fortran bindings are enabled this OMP
> >> > >> thing gets into the library. No idea how. I'll askm ORNL.
> >> > >>
> >> > >> 10:26 jczhang/fix-cray-mpicxx-includes/main=
> >> > >> /gpfs/alpine/csc314/scratch/adams/petsc2$ nm
> >> > >>
> >> /gpfs/alpine/csc314/scratch/adams/petsc2/arch-spock-opt-cray-kokkos/lib/libpetsc.so
> >> > >> |g offload
> >> > >> U .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa
> >> > >> U .omp_offloading.img_size.cray_amdgcn-amd-amdhsa
> >> > >> U .omp_offloading.img_start.cray_amdgcn-amd-amdhsa
> >> > >> 0000000001d457b0 T vecgetoffloadmask_
> >> > >>
> >> > >>
> >> > >> On Sun, Jul 18, 2021 at 8:43 AM Mark Adams <mfadams at lbl.gov> wrote:
> >> > >>
> >> > >>> Ah, your test was not on Spock ... I have something working but
> >> this is
> >> > >>> strange.
> >> > >>>
> >> > >>> I switched to the GNU ProgEnv. and it passed the Fortran test in
> >> > >>> 'check', but this failed:
> >> > >>>
> >> > >>>
> >> > >>>
> >> > >>>
> >> > >>>
> >> > >>>
> >> > >>>
> >> > >>>
> >> > >>>
> >> > >>> *08:26 2 jczhang/fix-cray-mpicxx-includes/main=
> >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ make
> >> > >>>
> >> PETSC_DIR=/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu
> >> > >>> PETSC_ARCH="" ex40f90ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>> -lamdhip64 -lhsa-runtime64 -fPIC -g -O0 -fPIC -g -O0
> >> > >>>
> >> -I/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/include
> >> > >>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex40f90.F90
> >> > >>>
> >> -Wl,-rpath,/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib
> >> > >>>
> >> -L/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib
> >> > >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib
> >> > >>> -L/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib
> >> > >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> >> > >>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> >> > >>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib
> >> > >>> <http://21.04.1.1/GNU/9.1/x86_64/lib>
> >> > >>> -L/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib
> >> > >>> <http://21.04.1.1/GNU/9.1/x86_64/lib>
> >> > >>> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib -L/opt/cray/pe/pmi/6.0.10/lib
> >> > >>> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >> > >>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >> > >>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0
> >> > >>> -L/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0
> >> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib64 -L/opt/gcc/10.2.0/snos/lib64
> >> > >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib
> >> > >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib
> >> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib -L/opt/gcc/10.2.0/snos/lib
> >> -lpetsc
> >> > >>> -lhipsparse -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> >> > >>> -lhsa-runtime64 -lstdc++ -ldl -lpmi -lmpi_gtl_hsa -lxpmem
> >> -lgfortran -lm
> >> > >>> -lsci_gnu_82_mpi -lsci_gnu_82 -lmpifort_gnu_91 -lmpi_gnu_91 -ldsmml
> >> > >>> -lgfortran -lquadmath -lpthread -lm -lgcc_s -lquadmath -lstdc++
> >> -ldl -o
> >> > >>> ex40f90ex40f90.F90:35:132: 35 | call
> >> > >>>
> >> DMDACreate2d(PETSC_COMM_WORLD,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,ten,ten,PETSC_DECIDE,PETSC_DECIDE,two,one,
> >> > >>> & |
> >> > >>>
> >> 1Error:
> >> > >>> Line truncated at (1) [-Werror=line-truncation]ex40f90.F90:35:132:*
> >> > >>> * ....*
> >> > >>>
> >> > >>> But ex5f (the Fortran check test) does work manually also (sanity
> >> check).
> >> > >>>
> >> > >>> Oddly I seem to have the cray compilers:
> >> > >>>
> >> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main=
> >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ which
> >> ftn
> >> > >>> /opt/cray/pe/craype/2.7.6/bin/ftn
> >> > >>>
> >> > >>> yet it is GNU:
> >> > >>>
> >> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main=
> >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ ftn
> >> --version
> >> > >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.)
> >> > >>> Copyright (C) 2020 Free Software Foundation, Inc.
> >> > >>> This is free software; see the source for copying conditions.
> >> There is
> >> > >>> NO
> >> > >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> >> > >>> PURPOSE.
> >> > >>>
> >> > >>> The documentation says ftn should be here:
> >> > >>>
> >> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main=
> >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$
> >> > >>> $GCC_PATH/bin/gfortran --version
> >> > >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.)
> >> > >>> Copyright (C) 2020 Free Software Foundation, Inc.
> >> > >>> This is free software; see the source for copying conditions.
> >> There is
> >> > >>> NO
> >> > >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> >> > >>> PURPOSE.
> >> > >>>
> >> > >>> Same, but the path is not the same:
> >> > >>>
> >> > >>> 08:39 jczhang/fix-cray-mpicxx-includes/main=
> >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ echo
> >> $GCC_PATH
> >> > >>> /opt/gcc/10.2.0
> >> > >>>
> >> > >>> Anyway, thanks for your help,
> >> > >>> Mark
> >> > >>>
> >> > >>> On Sat, Jul 17, 2021 at 11:26 PM Junchao Zhang <
> >> junchao.zhang at gmail.com>
> >> > >>> wrote:
> >> > >>>
> >> > >>>> Mark, I can reproduce this error with PrgEnv-cray, i.e., using the
> >> > >>>> Cray compiler (clang-11). Previously I used PrgEnv-gnu, which did
> >> not have
> >> > >>>> this error.
> >> > >>>> Probably it is a problem of Spock. But I am not sure.
> >> > >>>>
> >> > >>>> --Junchao Zhang
> >> > >>>>
> >> > >>>>
> >> > >>>> On Sat, Jul 17, 2021 at 10:17 AM Mark Adams <mfadams at lbl.gov>
> >> wrote:
> >> > >>>>
> >> > >>>>> And I can run a fortran test, with warnings, but C tests fail:
> >> > >>>>>
> >> > >>>>> 11:15 jczhang/fix-cray-mpicxx-includes/main=
> >> > >>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make
> >> > >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> >> > >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos -f gmakefile test
> >> > >>>>> search='ts_utils_dmplexlandau_tutorials-ex1f90_0'
> >> > >>>>> Using MAKEFLAGS: --
> >> search=ts_utils_dmplexlandau_tutorials-ex1f90_0
> >> > >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos
> >> > >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> >> > >>>>> FC
> >> > >>>>>
> >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o
> >> > >>>>> FLINKER
> >> > >>>>>
> >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90
> >> > >>>>>
> >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> >> > >>>>> warning: alignment 128 of symbol
> >> > >>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in
> >> > >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller
> >> than 256 in
> >> > >>>>>
> >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o
> >> > >>>>>
> >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> >> > >>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in
> >> > >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller
> >> than 256 in
> >> > >>>>>
> >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o
> >> > >>>>> TEST
> >> > >>>>>
> >> arch-spock-opt-cray-kokkos/tests/counts/ts_utils_dmplexlandau_tutorials-ex1f90_0.counts
> >> > >>>>> ok ts_utils_dmplexlandau_tutorials-ex1f90_0
> >> > >>>>> ok diff-ts_utils_dmplexlandau_tutorials-ex1f90_0
> >> > >>>>>
> >> > >>>>>
> >> > >>>>> On Sat, Jul 17, 2021 at 10:53 AM Mark Adams <mfadams at lbl.gov>
> >> wrote:
> >> > >>>>>
> >> > >>>>>> HUmm, I can not reproduce this.
> >> > >>>>>>
> >> > >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main=
> >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make
> >> > >>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> >> > >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos check
> >> > >>>>>> Running check examples to verify correct installation
> >> > >>>>>> Using PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc and
> >> > >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos
> >> > >>>>>> gmake[3]:
> >> > >>>>>>
> >> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301:
> >> > >>>>>> ex19.PETSc] Error 2 (ignored)
> >> > >>>>>> *******************Error detected during compile or
> >> > >>>>>> link!*******************
> >> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex19
> >> > >>>>>>
> >> > >>>>>>
> >> *********************************************************************************
> >> > >>>>>> cc -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64
> >> > >>>>>> -lhsa-runtime64 -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing
> >> > >>>>>> -Wno-unknown-pragmas -fstack-protector -Qunused-arguments
> >> > >>>>>> -fvisibility=hidden -g -O0 -fPIC -Wall -Wwrite-strings
> >> > >>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector
> >> > >>>>>> -Qunused-arguments -fvisibility=hidden -g -O0
> >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> >> > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> >> > >>>>>>
> >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include
> >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex19.c
> >> > >>>>>>
> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>>
> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>>
> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>>
> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> >> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib
> >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>>>>>
> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >> > >>>>>>
> >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >> > >>>>>>
> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >> > >>>>>>
> >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore
> >> -lhipsparse
> >> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> >> -lhsa-runtime64
> >> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray
> >> -lmpi_cray
> >> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath
> >> -lcrayacc_amdgpu
> >> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran
> >> -lpthread
> >> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64
> >> > >>>>>> -lquadmath -lstdc++ -ldl -o ex19
> >> > >>>>>> ld.lld: error:
> >> > >>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >> > >>>>>> undefined reference to
> >> .omp_offloading.img_start.cray_amdgcn-amd-amdhsa
> >> > >>>>>> [--no-allow-shlib-undefined]
> >> > >>>>>> ld.lld: error:
> >> > >>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >> > >>>>>> undefined reference to
> >> .omp_offloading.img_size.cray_amdgcn-amd-amdhsa
> >> > >>>>>> [--no-allow-shlib-undefined]
> >> > >>>>>> ld.lld: error:
> >> > >>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >> > >>>>>> undefined reference to
> >> .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa
> >> > >>>>>> [--no-allow-shlib-undefined]
> >> > >>>>>> clang-11: error: linker command failed with exit code 1 (use -v
> >> to
> >> > >>>>>> see invocation)
> >> > >>>>>> gmake[4]: *** [<builtin>: ex19] Error 1
> >> > >>>>>> gmake[3]:
> >> > >>>>>>
> >> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301:
> >> > >>>>>> ex3k.PETSc] Error 2 (ignored)
> >> > >>>>>> *******************Error detected during compile or
> >> > >>>>>> link!*******************
> >> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex3k
> >> > >>>>>>
> >> > >>>>>>
> >> *********************************************************************************
> >> > >>>>>> hipcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing
> >> > >>>>>> -Wno-unknown-pragmas -fvisibility=hidden -g -O0 -std=c++14
> >> > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> >> > >>>>>>
> >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include
> >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> >> -I/opt/cray/pe/libsci/
> >> > >>>>>> 21.04.1.1/CRAY/9.0/x86_64/include
> >> > >>>>>> -I/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/include
> >> > >>>>>> -I/opt/cray/pe/pmi/6.0.10/include
> >> -I/opt/cray/pe/dsmml/0.1.4/dsmml//include
> >> > >>>>>> -I/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/include
> >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib -L/opt/cray/pe/pmi/6.0.10/lib
> >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml//lib
> >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib/pkgconfig/../
> >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>>>>> -Wl,--as-needed,-lsci_cray_mpi,--no-as-needed
> >> > >>>>>> -Wl,--as-needed,-lsci_cray,--no-as-needed
> >> > >>>>>> -Wl,--as-needed,-lmpi_cray,--no-as-needed
> >> > >>>>>> -Wl,--as-needed,-ldsmml,--no-as-needed
> >> > >>>>>> -Wl,--as-needed,-lpgas-shmem,--no-as-needed -lpmi -ldl
> >> -lmpi_gtl_hsa
> >> > >>>>>> -lxpmem -lquadmath -lmodules -lfi -lcraymath -lf -lu -lcsup
> >> > >>>>>> ex3k.kokkos.cxx
> >> > >>>>>>
> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>>
> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>>
> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>>
> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> >> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib
> >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>>>>>
> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >> > >>>>>>
> >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >> > >>>>>>
> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >> > >>>>>>
> >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore
> >> -lhipsparse
> >> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> >> -lhsa-runtime64
> >> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray
> >> -lmpi_cray
> >> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath
> >> -lcrayacc_amdgpu
> >> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran
> >> -lpthread
> >> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64
> >> > >>>>>> -lquadmath -lstdc++ -ldl -o ex3k
> >> > >>>>>>
> >> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld:
> >> > >>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >> > >>>>>> undefined reference to
> >> `.omp_offloading.img_size.cray_amdgcn-amd-amdhsa'
> >> > >>>>>>
> >> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld:
> >> > >>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >> > >>>>>> undefined reference to
> >> `.omp_offloading.img_start.cray_amdgcn-amd-amdhsa'
> >> > >>>>>>
> >> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld:
> >> > >>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >> > >>>>>> undefined reference to
> >> `.omp_offloading.img_cache.cray_amdgcn-amd-amdhsa'
> >> > >>>>>> clang-12: error: linker command failed with exit code 1 (use -v
> >> to
> >> > >>>>>> see invocation)
> >> > >>>>>> gmake[4]: ***
> >> > >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/test:26:
> >> ex3k]
> >> > >>>>>> Error 1
> >> > >>>>>> gmake[3]: [makefile:102: runex3k_kokkos] Error 2 (ignored)
> >> > >>>>>> 1,25c1,4
> >> > >>>>>> < atol=1e-50, rtol=1e-08, stol=1e-08, maxit=50, maxf=10000
> >> > >>>>>> < Vec Object: Exact Solution 2 MPI processes
> >> > >>>>>> < type: mpikokkos
> >> > >>>>>> < Process [0]
> >> > >>>>>> < 0.
> >> > >>>>>> < 0.015625
> >> > >>>>>> < 0.125
> >> > >>>>>> < Process [1]
> >> > >>>>>> < 0.421875
> >> > >>>>>> < 1.
> >> > >>>>>> < Vec Object: Forcing function 2 MPI processes
> >> > >>>>>> < type: mpikokkos
> >> > >>>>>> < Process [0]
> >> > >>>>>> < 1e-72
> >> > >>>>>> < 1.50024
> >> > >>>>>> < 3.01563
> >> > >>>>>> < Process [1]
> >> > >>>>>> < 4.67798
> >> > >>>>>> < 7.
> >> > >>>>>> < 0 SNES Function norm 5.414682427127e+00
> >> > >>>>>> < 1 SNES Function norm 2.952582418265e-01
> >> > >>>>>> < 2 SNES Function norm 4.502293658739e-04
> >> > >>>>>> < 3 SNES Function norm 1.389665806646e-09
> >> > >>>>>> < Number of SNES iterations = 3
> >> > >>>>>> < Norm of error 1.49752e-10 Iterations 3
> >> > >>>>>> ---
> >> > >>>>>> > slurmstepd: error: execve():
> >> > >>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No such
> >> > >>>>>> file or directory
> >> > >>>>>> > slurmstepd: error: execve():
> >> > >>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No such
> >> > >>>>>> file or directory
> >> > >>>>>> > srun: error: spock01: tasks 0-1: Exited with exit code 2
> >> > >>>>>> > srun: launch/slurm: _step_signal: Terminating StepId=272979.0
> >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials
> >> > >>>>>> Possible problem with ex3k running with kokkos-kernels, diffs
> >> above
> >> > >>>>>> =========================================
> >> > >>>>>> *******************Error detected during compile or
> >> > >>>>>> link!*******************
> >> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex5f
> >> > >>>>>> *********************************************************
> >> > >>>>>> ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64
> >> > >>>>>> -lhsa-runtime64 -fPIC -g -O0 -fPIC -g -O0
> >> > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> >> > >>>>>>
> >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include
> >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex5f.F90
> >> > >>>>>>
> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>>
> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>>
> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>>
> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> >> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib
> >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>>>>>
> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >> > >>>>>>
> >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >> > >>>>>>
> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >> > >>>>>>
> >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore
> >> -lhipsparse
> >> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> >> -lhsa-runtime64
> >> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray
> >> -lmpi_cray
> >> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath
> >> -lcrayacc_amdgpu
> >> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran
> >> -lpthread
> >> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64
> >> > >>>>>> -lquadmath -lstdc++ -ldl -o ex5f
> >> > >>>>>>
> >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> >> > >>>>>> warning: alignment 128 of symbol
> >> > >>>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in
> >> > >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller
> >> than 256 in
> >> > >>>>>> /tmp/pe_30429/ex5f_1.o
> >> > >>>>>>
> >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> >> > >>>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in
> >> > >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller
> >> than 256 in
> >> > >>>>>> /tmp/pe_30429/ex5f_1.o
> >> > >>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1
> >> MPI
> >> > >>>>>> process
> >> > >>>>>> Completed test examples
> >> > >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main=
> >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ ll
> >> > >>>>>>
> >> > >>>>>> On Fri, Jul 16, 2021 at 11:28 PM Junchao Zhang <
> >> > >>>>>> junchao.zhang at gmail.com> wrote:
> >> > >>>>>>
> >> > >>>>>>> Mark, I configured with Fortran binding enabled with main + MR
> >> !4175
> >> > >>>>>>> <https://gitlab.com/petsc/petsc/-/merge_requests/4175>
> >> > >>>>>>>
> >> > >>>>>>> '--with-mpiexec=srun',
> >> > >>>>>>> '--with-shared-libraries=1',
> >> > >>>>>>> '--with-cc=cc',
> >> > >>>>>>> '--with-cxx=CC',
> >> > >>>>>>> '--with-fc=ftn',
> >> > >>>>>>> '--with-fortran-bindings',
> >> > >>>>>>> '--with-hip',
> >> > >>>>>>> '--with-hipc=hipcc',
> >> > >>>>>>> '--with-debugging',
> >> > >>>>>>> '--CPPFLAGS=-I${ROCM_PATH}/include',
> >> > >>>>>>> '--CXXPPFLAGS=-I${ROCM_PATH}/include',
> >> > >>>>>>> '--CC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64
> >> -lhsa-runtime64',
> >> > >>>>>>> '--CXX_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64
> >> -lhsa-runtime64',
> >> > >>>>>>> '--FC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64
> >> -lhsa-runtime64',
> >> > >>>>>>> '--COPTFLAGS=-g -O0',
> >> > >>>>>>> '--CXXOPTFLAGS=-g -O0',
> >> > >>>>>>> '--FOPTFLAGS=-g -O0',
> >> > >>>>>>> '--download-kokkos',
> >> > >>>>>>> '--download-kokkos-kernels',
> >> > >>>>>>> '--download-kokkos-commit=3.4.01',
> >> > >>>>>>> '--download-kokkos-kernels-commit=3.4.01',
> >> > >>>>>>> '--with-kokkos-hip-arch=VEGA908',
> >> > >>>>>>>
> >> > >>>>>>> and 'make check' ran smoothly on a compute node
> >> > >>>>>>>
> >> > >>>>>>> $ make check
> >> > >>>>>>> Running check examples to verify correct installation
> >> > >>>>>>> Using PETSC_DIR=/ccs/home/jczhang/petsc and
> >> > >>>>>>> PETSC_ARCH=arch-spock-cray-kokkos-dbg
> >> > >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 1
> >> MPI
> >> > >>>>>>> process
> >> > >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 2
> >> MPI
> >> > >>>>>>> processes
> >> > >>>>>>> C/C++ example src/snes/tutorials/ex3k run successfully with
> >> > >>>>>>> kokkos-kernels
> >> > >>>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1
> >> MPI
> >> > >>>>>>> process
> >> > >>>>>>>
> >> > >>>>>>> Completed test examples
> >> > >>>>>>>
> >> > >>>>>>>
> >> > >>>>>>> --Junchao Zhang
> >> > >>>>>>>
> >> > >>>>>>>
> >> > >>>>>>> On Fri, Jul 16, 2021 at 6:04 PM Mark Adams <mfadams at lbl.gov>
> >> wrote:
> >> > >>>>>>>
> >> > >>>>>>>> And I find that this error, on non-Kokkos C tests, is fixed by
> >> > >>>>>>>> turning the fortran bindings off:
> >> > >>>>>>>>
> >> > >>>>>>>> ld.lld: error:
> >> > >>>>>>>>
> >> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so:
> >> > >>>>>>>> undefined reference to
> >> .omp_offloading.img_start.cray_amdgcn-amd-amdhsa
> >> > >>>>>>>> [--no-allow-shlib-undefined]
> >> > >>>>>>>> ld.lld: error:
> >> > >>>>>>>>
> >> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so:
> >> > >>>>>>>> undefined reference to
> >> .omp_offloading.img_size.cray_amdgcn-amd-amdhsa
> >> > >>>>>>>> [--no-allow-shlib-undefined]
> >> > >>>>>>>> ld.lld: error:
> >> > >>>>>>>>
> >> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so:
> >> > >>>>>>>> undefined reference to
> >> .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa
> >> > >>>>>>>> [--no-allow-shlib-undefined]
> >> > >>>>>>>>
> >> > >>>>>>>> On Fri, Jul 16, 2021 at 3:53 PM Mark Adams <mfadams at lbl.gov>
> >> wrote:
> >> > >>>>>>>>
> >> > >>>>>>>>> Not complex. THis has some overlap with my problem w/o Kokkos.
> >> > >>>>>>>>>
> >> > >>>>>>>>> On Fri, Jul 16, 2021 at 12:54 PM Junchao Zhang <
> >> > >>>>>>>>> junchao.zhang at gmail.com> wrote:
> >> > >>>>>>>>>
> >> > >>>>>>>>>> Do you use complex? post your configure.log.
> >> > >>>>>>>>>>
> >> > >>>>>>>>>> --Junchao Zhang
> >> > >>>>>>>>>>
> >> > >>>>>>>>>>
> >> > >>>>>>>>>> On Fri, Jul 16, 2021 at 9:47 AM Mark Adams <mfadams at lbl.gov>
> >> > >>>>>>>>>> wrote:
> >> > >>>>>>>>>>
> >> > >>>>>>>>>>> The simple Kokkos example is failing for me on Spock.
> >> > >>>>>>>>>>> Any ideas?
> >> > >>>>>>>>>>> Thanks,
> >> > >>>>>>>>>>>
> >> > >>>>>>>>>>> 10:44 main *=
> >> > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$
> >> make
> >> > >>>>>>>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> >> > >>>>>>>>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos ex3k
> >> > >>>>>>>>>>> MPICH_CXX="hipcc" OMPI_CXX="hipcc" CC
> >> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lhsa-runtime64
> >> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64
> >> -lhsa-runtime64
> >> > >>>>>>>>>>> -Wall -Wwrite-strings -Wno-strict-aliasing
> >> -Wno-unknown-pragmas
> >> > >>>>>>>>>>> -fstack-protector -fvisibility=hidden -g -O2 -fPIC -Wall
> >> -Wwrite-strings
> >> > >>>>>>>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas
> >> -fvisibility=hidden -g -O3
> >> > >>>>>>>>>>> -std=c++14
> >> -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> >> > >>>>>>>>>>>
> >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/include
> >> > >>>>>>>>>>>
> >> -I/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include
> >> > >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> >> > >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> >> ex3k.kokkos.cxx
> >> > >>>>>>>>>>>
> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib
> >> > >>>>>>>>>>>
> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib
> >> > >>>>>>>>>>>
> >> -Wl,-rpath,/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib
> >> > >>>>>>>>>>>
> >> -L/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib
> >> > >>>>>>>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >> > >>>>>>>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64
> >> -L/opt/gcc/8.1.0/snos/lib64
> >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/libsci/
> >> 21.04.1.1/CRAY/9.0/x86_64/lib
> >> > >>>>>>>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >> > >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> >> > >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> >> > >>>>>>>>>>> -L/opt/cray/pe/pmi/6.0.10/lib
> >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >> > >>>>>>>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >> > >>>>>>>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >> > >>>>>>>>>>>
> >> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>>>>>>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >> > >>>>>>>>>>>
> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >> > >>>>>>>>>>>
> >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >> > >>>>>>>>>>>
> >> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >> > >>>>>>>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >> > >>>>>>>>>>>
> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >> > >>>>>>>>>>>
> >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >> > >>>>>>>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore
> >> -lhipsparse
> >> > >>>>>>>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> >> -lhsa-runtime64
> >> > >>>>>>>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray
> >> -lmpifort_cray -lmpi_cray
> >> > >>>>>>>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath
> >> -lcrayacc_amdgpu
> >> > >>>>>>>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup
> >> -lgfortran -lpthread
> >> > >>>>>>>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64
> >> -lclang_rt.builtins-x86_64
> >> > >>>>>>>>>>> -lquadmath -lstdc++ -ldl -o ex3k
> >> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212:
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:259:11:
> >> > >>>>>>>>>>> error: no member named 'lock_address_host_space' in
> >> namespace
> >> > >>>>>>>>>>> 'Kokkos::Impl::Kokkos::Impl'; did you mean simply
> >> 'lock_address_host_space'?
> >> > >>>>>>>>>>> while (!Impl::lock_address_host_space((void*)dest))
> >> > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >> > >>>>>>>>>>> lock_address_host_space
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_HostSpace.hpp:83:6:
> >> > >>>>>>>>>>> note: 'lock_address_host_space' declared here
> >> > >>>>>>>>>>> bool lock_address_host_space(void* ptr);
> >> > >>>>>>>>>>> ^
> >> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212:
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:261:3:
> >> > >>>>>>>>>>> error: no member named 'memory_fence' in namespace
> >> 'Kokkos::Impl::Kokkos';
> >> > >>>>>>>>>>> did you mean simply 'memory_fence'?
> >> > >>>>>>>>>>> Kokkos::memory_fence();
> >> > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~
> >> > >>>>>>>>>>> memory_fence
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6:
> >> > >>>>>>>>>>> note: 'memory_fence' declared here
> >> > >>>>>>>>>>> void memory_fence() {
> >> > >>>>>>>>>>> ^
> >> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47:
> >> > >>>>>>>>>>> In file included from
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212:
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:277:3:
> >> > >>>>>>>>>>> error: no member named 'memory_fence' in namespace
> >> 'Kokkos::Impl::Kokkos';
> >> > >>>>>>>>>>> did you mean simply 'memory_fence'?
> >> > >>>>>>>>>>> Kokkos::memory_fence();
> >> > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~
> >> > >>>>>>>>>>> memory_fence
> >> > >>>>>>>>>>>
> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6:
> >> > >>>>>>>>>>> note: 'memory_fence' declared here
> >> > >>>>>>>>>>> void memory_fence() {
> >> > >>>>>>>>>>> ^
> >> > >>>>>>>>>>>
> >> > >>>>>>>>>>
> >>
> >>
> >>
> >>
> >> --
> >> Scott Kruger
> >> Tech-X Corporation kruger at txcorp.com
> >> 5621 Arapahoe Ave, Suite A Phone: (720) 466-3196
> >> Boulder, CO 80303 Fax: (303) 448-7756
> >>
> >
--
Scott Kruger
Tech-X Corporation kruger at txcorp.com
5621 Arapahoe Ave, Suite A Phone: (720) 466-3196
Boulder, CO 80303 Fax: (303) 448-7756
More information about the petsc-dev
mailing list