[petsc-dev] Kokkos build fail

Thu Dec 9 09:09:20 CST 2021

OK, trying to use clang12. Installed it with brew and xcode clang (v13) and
they both give this version error.
Using C++ dialect c++14 as lower bound due to package(s):
- kokkos
But C++ compiler
(/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++)
appears non-compliant with c++14 or didn't accept:
- -std=gnu++17
- -std=c++17
- -std=gnu++14
- -std=c++14
*******************************************************************************

On Thu, Dec 9, 2021 at 8:57 AM Satish Balay <balay at mcs.anl.gov> wrote:

> My build is with xcode clang - not brew clang
>
> Satish
>
> On Thu, 9 Dec 2021, Mark Adams wrote:
>
> > Mpich seems to give the same error.
> > I use clang 13.0. I think I get that from homebrew.
> > Should I try something like:
> > brew install llvm at 12
> >
> > I see:
> >
> > (conda_env) 07:50 adams/fix_mat_ex5k= ~/Codes/petsc2$ brew info llvm
> > llvm: stable 13.0.0 (bottled), HEAD [keg-only]
> > Next-gen compiler infrastructure
> > https://llvm.org/
> > Not installed
> > From:
> https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/llvm.rb
> > License: Apache-2.0 with LLVM-exception
> > ==> Dependencies
> > Build: cmake ✔, swig ✘
> > Required: python at 3.10 ✘
> > ==> Options
> > --HEAD
> > Install HEAD version
> > ==> Caveats
> > To use the bundled libc++ please add the following LDFLAGS:
> >   LDFLAGS="-L/usr/local/opt/llvm/lib -Wl,-rpath,/usr/local/opt/llvm/lib"
> >
> > llvm is keg-only, which means it was not symlinked into /usr/local,
> > because macOS already provides this software and installing another
> version
> > in
> > parallel can cause all kinds of trouble.
> >
> > ==> Analytics
> > install: 32,204 (30 days), 98,525 (90 days), 299,560 (365 days)
> > install-on-request: 17,978 (30 days), 62,171 (90 days), 212,999 (365
> days)
> > build-error: 2,696 (30 days)
> >
> >
> > On Wed, Dec 8, 2021 at 1:30 PM Satish Balay <balay at mcs.anl.gov> wrote:
> >
> > > This build goes through fine for me. [with petsc/main]
> > >
> > > xpro:petsc balay$ sw_vers
> > > ProductName:    Mac OS X
> > > ProductVersion: 10.15.7
> > > BuildVersion:   19H1519
> > > xpro:petsc balay$  clang --version
> > > Apple clang version 12.0.0 (clang-1200.0.32.2)
> > > <snip>
> > > xpro:petsc balay$ ./configure --download-mpich --with-fc=0
> COPTFLAGS="-g
> > > -O" CXXOPTFLAGS="-g -O" --with-fortran-bindings=0 --download-kokkos=1
> > > --download-kokkos-kernels=1 --with-kokkos-kernels-tpl=0  --with-zlib=1
> > > --with-x=0
> > >
> > > Satish
> > >
> > >
> > > On Wed, 8 Dec 2021, Jacob Faibussowitsch wrote:
> > >
> > > > > And your algorithm looks idempotent to me....
> > > >
> > > > Believe me, I was sufficiently shocked when everything magically
> started
> > > working the 3rd time around :)
> > > >
> > > > Best regards,
> > > >
> > > > Jacob Faibussowitsch
> > > > (Jacob Fai - booss - oh - vitch)
> > > >
> > > > > On Dec 8, 2021, at 09:29, Mark Adams <mfadams at lbl.gov> wrote:
> > > > >
> > > > > Thanks,
> > > > > And your algorithm looks idempotent to me....
> > > > >
> > > > >
> > > > > On Wed, Dec 8, 2021 at 9:13 AM Jacob Faibussowitsch <
> > > jacob.fai at gmail.com <mailto:jacob.fai at gmail.com>> wrote:
> > > > > So I had similar issues back when I originally wrote the clang
> linter
> > > — on Big Sur. The TL;DR for me was that Catalina originally shipped
> with
> > > broken cmath headers, something future updates wouldn’t necessarily
> fix.
> > > The only way to fix it was to:
> > > > >
> > > > > 1. Reinstall CLT
> > > > > 2. Reinstall/install Xcode
> > > > > 3. Repeat the above until it was fixed
> > > > >
> > > > > Now you may have an unrelated issue, but my error messages (e.g.
> about
> > > missing “signbit”, “std::less_than”, etc in global namespace) were very
> > > very similar. See discussions here:
> > > > >
> > > > > 1. https://gitlab.com/petsc/petsc/-/merge_requests/3773 <
> > > https://gitlab.com/petsc/petsc/-/merge_requests/3773>
> > > > > 2.
> > >
> https://stackoverflow.com/questions/58628377/catalina-c-using-cmath-headers-yield-error-no-member-named-signbit-in-th
> > > <
> > >
> https://stackoverflow.com/questions/58628377/catalina-c-using-cmath-headers-yield-error-no-member-named-signbit-in-th
> > > >
> > > > > 3.
> > >
> https://stackoverflow.com/questions/58313047/cannot-compile-r-packages-with-c-code-after-updating-to-macos-catalina
> > > <
> > >
> https://stackoverflow.com/questions/58313047/cannot-compile-r-packages-with-c-code-after-updating-to-macos-catalina
> > > >
> > > > >
> > > > > If these help then you’re lucky I never clean out my “misc”
> bookmarks
> > > folder :)
> > > > >
> > > > > Best regards,
> > > > >
> > > > > Jacob Faibussowitsch
> > > > > (Jacob Fai - booss - oh - vitch)
> > > > >
> > > > >> On Dec 8, 2021, at 09:06, Mark Adams <mfadams at lbl.gov <mailto:
> > > mfadams at lbl.gov>> wrote:
> > > > >>
> > > > >> Monterey.
> > > > >> And my serial, optimized build works but it seems to use the same
> > > compiler.
> > > > >> I am testing the parallel build again with debug turned off.
> > > > >>
> > > > >> On Wed, Dec 8, 2021 at 9:04 AM Jacob Faibussowitsch <
> > > jacob.fai at gmail.com <mailto:jacob.fai at gmail.com>> wrote:
> > > > >> You aren’t by chance on Catalina are you?
> > > > >>
> > > > >> Best regards,
> > > > >>
> > > > >> Jacob Faibussowitsch
> > > > >> (Jacob Fai - booss - oh - vitch)
> > > > >>
> > > > >>> On Dec 8, 2021, at 08:49, Mark Adams <mfadams at lbl.gov <mailto:
> > > mfadams at lbl.gov>> wrote:
> > > > >>>
> > > > >>> I am failing on OSX with openmpi. Kokkos is failing to build.
> > > > >>> I seem to be using:
> > > > >>>
> > > > >>> (conda_env) 08:46 1 adams/fix_mat_ex5k *= ~/Codes/petsc2$
> > > /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --version
> > > > >>> Apple clang version 13.0.0 (clang-1300.0.29.3)
> > > > >>> Target: x86_64-apple-darwin21.1.0
> > > > >>> Thread model: posix
> > > > >>> InstalledDir:
> > >
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
> > > > >>>
> > > > >>> Any ideas?
> > > > >>> Thanks,
> > > > >>> Mark
> > > > >>> <configure.log>
> > > > >>
> > > > >
> > > >
> > > >
> > >
> >
>
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