[petsc-dev] Kokkos build fail

[Satish Balay]

This build goes through fine for me. [with petsc/main]

xpro:petsc balay$ sw_vers 
ProductName:	Mac OS X
ProductVersion:	10.15.7
BuildVersion:	19H1519
xpro:petsc balay$  clang --version
Apple clang version 12.0.0 (clang-1200.0.32.2)
<snip>
xpro:petsc balay$ ./configure --download-mpich --with-fc=0 COPTFLAGS="-g -O" CXXOPTFLAGS="-g -O" --with-fortran-bindings=0 --download-kokkos=1 --download-kokkos-kernels=1 --with-kokkos-kernels-tpl=0  --with-zlib=1  --with-x=0

Satish


On Wed, 8 Dec 2021, Jacob Faibussowitsch wrote:

> > And your algorithm looks idempotent to me....
> 
> Believe me, I was sufficiently shocked when everything magically started working the 3rd time around :)
> 
> Best regards,
> 
> Jacob Faibussowitsch
> (Jacob Fai - booss - oh - vitch)
> 
> > On Dec 8, 2021, at 09:29, Mark Adams <mfadams at lbl.gov> wrote:
> > 
> > Thanks,
> > And your algorithm looks idempotent to me....
> > 
> > 
> > On Wed, Dec 8, 2021 at 9:13 AM Jacob Faibussowitsch <jacob.fai at gmail.com <mailto:jacob.fai at gmail.com>> wrote:
> > So I had similar issues back when I originally wrote the clang linter — on Big Sur. The TL;DR for me was that Catalina originally shipped with broken cmath headers, something future updates wouldn’t necessarily fix. The only way to fix it was to:
> > 
> > 1. Reinstall CLT
> > 2. Reinstall/install Xcode
> > 3. Repeat the above until it was fixed
> > 
> > Now you may have an unrelated issue, but my error messages (e.g. about missing “signbit”, “std::less_than”, etc in global namespace) were very very similar. See discussions here:
> > 
> > 1. https://gitlab.com/petsc/petsc/-/merge_requests/3773 <https://gitlab.com/petsc/petsc/-/merge_requests/3773>
> > 2. https://stackoverflow.com/questions/58628377/catalina-c-using-cmath-headers-yield-error-no-member-named-signbit-in-th <https://stackoverflow.com/questions/58628377/catalina-c-using-cmath-headers-yield-error-no-member-named-signbit-in-th>
> > 3. https://stackoverflow.com/questions/58313047/cannot-compile-r-packages-with-c-code-after-updating-to-macos-catalina <https://stackoverflow.com/questions/58313047/cannot-compile-r-packages-with-c-code-after-updating-to-macos-catalina>
> > 
> > If these help then you’re lucky I never clean out my “misc” bookmarks folder :)
> > 
> > Best regards,
> > 
> > Jacob Faibussowitsch
> > (Jacob Fai - booss - oh - vitch)
> > 
> >> On Dec 8, 2021, at 09:06, Mark Adams <mfadams at lbl.gov <mailto:mfadams at lbl.gov>> wrote:
> >> 
> >> Monterey.
> >> And my serial, optimized build works but it seems to use the same compiler.
> >> I am testing the parallel build again with debug turned off.
> >> 
> >> On Wed, Dec 8, 2021 at 9:04 AM Jacob Faibussowitsch <jacob.fai at gmail.com <mailto:jacob.fai at gmail.com>> wrote:
> >> You aren’t by chance on Catalina are you?
> >> 
> >> Best regards,
> >> 
> >> Jacob Faibussowitsch
> >> (Jacob Fai - booss - oh - vitch)
> >> 
> >>> On Dec 8, 2021, at 08:49, Mark Adams <mfadams at lbl.gov <mailto:mfadams at lbl.gov>> wrote:
> >>> 
> >>> I am failing on OSX with openmpi. Kokkos is failing to build.
> >>> I seem to be using:
> >>> 
> >>> (conda_env) 08:46 1 adams/fix_mat_ex5k *= ~/Codes/petsc2$ /usr/local/Cellar/open-mpi/4.1.1_2/bin/mpicxx --version
> >>> Apple clang version 13.0.0 (clang-1300.0.29.3)
> >>> Target: x86_64-apple-darwin21.1.0
> >>> Thread model: posix
> >>> InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
> >>> 
> >>> Any ideas?
> >>> Thanks,
> >>> Mark
> >>> <configure.log>
> >> 
> > 
> 
>