[petsc-dev] ExodusII + Cmake Doesn't Find PnetCDF/NetCDF

[Jacob Faibussowitsch]

> Are you saying it works normally because all the dependent packages are installed in the same place and it gets that place through another package?

Seems so. Using the new and ~improved~ reconfigure:

—    '—with-pnetcdf-dir=/Users/jacobfaibussowitsch/NoSync/petscpackages’,
+++ ‘—download-pnetcdf’,

—    '—with-netcdf-dir=/Users/jacobfaibussowitsch/NoSync/petscpackages’,
+++ ‘—download-netcdf’,

And configure finishes as expected.

Best regards,

Jacob Faibussowitsch
(Jacob Fai - booss - oh - vitch)
Cell: (312) 694-3391

> On May 21, 2020, at 7:59 PM, Matthew Knepley <knepley at gmail.com> wrote:
> 
> On Thu, May 21, 2020 at 8:48 PM Jacob Faibussowitsch <jacob.fai at gmail.com <mailto:jacob.fai at gmail.com>> wrote:
> Hello All,
> 
> I ran a ./reconfigure —with-clean to update older packages/clean install however I ran into some issues. My arch (lets call it debug-arch) configuration isn’t “Standard” in that I use another arch (master-arch) to house many common packages and point all other arches to it via the “—with-package-name-dir” option. 
> 
> Are you saying it works normally because all the dependent packages are installed in the same place and it gets that place through another package?
> I can believe that, It sounds like a bug in ExodusII/SECAS that you can report to Jeff.
> 
>   Thanks,
> 
>      Matt
>  
> During the debug-arch configure exodusII does not finish configure with the following error message:
> 
> CMake Error at /usr/local/Cellar/cmake/3.17.2/share/cmake/Modules/FindPackageHandleStandardArgs.cma\
> ke:164 (message):
>   Could NOT find PNetCDF (missing: PNetCDF_LIBRARIES PNetCDF_INCLUDE_DIRS)
> Call Stack (most recent call first):
>   /usr/local/Cellar/cmake/3.17.2/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:445 (_FPHS\
> A_FAILURE_MESSAGE)
>   cmake/tribits/common_tpls/find_modules/FindPNetCDF.cmake:216 (find_package_handle_standard_args)
>   cmake/tribits/common_tpls/utils/AddPackageDependency.cmake:86 (find_package)
>   cmake/tribits/common_tpls/find_modules/FindNetCDF.cmake:322 (add_package_dependency)
>   cmake/tribits/common_tpls/FindTPLNetcdf.cmake:70 (find_package)
>   cmake/tribits/core/package_arch/TribitsProcessEnabledTpl.cmake:106 (INCLUDE)
>   cmake/tribits/core/package_arch/TribitsGlobalMacros.cmake:1724 (TRIBITS_PROCESS_ENABLED_TPL)
>   cmake/tribits/core/package_arch/TribitsProjectImpl.cmake:206 (TRIBITS_PROCESS_ENABLED_TPLS)
>   cmake/tribits/core/package_arch/TribitsProject.cmake:93 (TRIBITS_PROJECT_IMPL)
>   CMakeLists.txt:46 (TRIBITS_PROJECT)
> 
> However checking the Cmake logs I find the following:
> 
> Processing enabled TPL: Pnetcdf (enabled explicitly, disable with -DTPL_ENABLE_Pnetcdf=OFF)
> -- Pnetcdf_LIBRARY_NAMES='pnetcdf'
> -- Searching for libs in Pnetcdf_LIBRARY_DIRS='/Users/jacobfaibussowitsch/NoSync/petscpackages/lib'
> -- Searching for a lib in the set "pnetcdf":
> --   Searching for lib 'pnetcdf' ...
> --     Found lib '/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libpnetcdf.dylib'
> -- TPL_Pnetcdf_LIBRARIES='/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libpnetcdf.dylib'
> -- Searching for headers in Pnetcdf_INCLUDE_DIRS='/Users/jacobfaibussowitsch/NoSync/petscpackages/i\
> nclude'
> -- Searching for a header file in the set "pnetcdf.h":
> --   Searching for header 'pnetcdf.h' ...
> --     Found header '/Users/jacobfaibussowitsch/NoSync/petscpackages/include/pnetcdf.h'
> -- Found TPL 'Pnetcdf' include dirs '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'
> -- TPL_Pnetcdf_INCLUDE_DIRS='/Users/jacobfaibussowitsch/NoSync/petscpackages/include'
> Processing enabled TPL: Netcdf (enabled explicitly, disable with -DTPL_ENABLE_Netcdf=OFF)
> 
> Indicating that it does indeed find pnetcdf… but saves its location to “TPL_Pnetcdf_INCLUDE_DIRS” instead of the “PNetCDF_INCLUDE_DIRS” which it later searches. I have included both reconfigure scripts, and latest configure.log.
> 
> Best regards,
> 
> Jacob Faibussowitsch
> (Jacob Fai - booss - oh - vitch)
> Cell: (312) 694-3391
> 
> 
> -- 
> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
> -- Norbert Wiener
> 
> https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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