[petsc-dev] ExodusII + Cmake Doesn't Find PnetCDF/NetCDF

[Jacob Faibussowitsch]

Hello All,

I ran a ./reconfigure —with-clean to update older packages/clean install however I ran into some issues. My arch (lets call it debug-arch) configuration isn’t “Standard” in that I use another arch (master-arch) to house many common packages and point all other arches to it via the “—with-package-name-dir” option. 

During the debug-arch configure exodusII does not finish configure with the following error message:

CMake Error at /usr/local/Cellar/cmake/3.17.2/share/cmake/Modules/FindPackageHandleStandardArgs.cma\
ke:164 (message):
  Could NOT find PNetCDF (missing: PNetCDF_LIBRARIES PNetCDF_INCLUDE_DIRS)
Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.17.2/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:445 (_FPHS\
A_FAILURE_MESSAGE)
  cmake/tribits/common_tpls/find_modules/FindPNetCDF.cmake:216 (find_package_handle_standard_args)
  cmake/tribits/common_tpls/utils/AddPackageDependency.cmake:86 (find_package)
  cmake/tribits/common_tpls/find_modules/FindNetCDF.cmake:322 (add_package_dependency)
  cmake/tribits/common_tpls/FindTPLNetcdf.cmake:70 (find_package)
  cmake/tribits/core/package_arch/TribitsProcessEnabledTpl.cmake:106 (INCLUDE)
  cmake/tribits/core/package_arch/TribitsGlobalMacros.cmake:1724 (TRIBITS_PROCESS_ENABLED_TPL)
  cmake/tribits/core/package_arch/TribitsProjectImpl.cmake:206 (TRIBITS_PROCESS_ENABLED_TPLS)
  cmake/tribits/core/package_arch/TribitsProject.cmake:93 (TRIBITS_PROJECT_IMPL)
  CMakeLists.txt:46 (TRIBITS_PROJECT)

However checking the Cmake logs I find the following:

Processing enabled TPL: Pnetcdf (enabled explicitly, disable with -DTPL_ENABLE_Pnetcdf=OFF)
-- Pnetcdf_LIBRARY_NAMES='pnetcdf'
-- Searching for libs in Pnetcdf_LIBRARY_DIRS='/Users/jacobfaibussowitsch/NoSync/petscpackages/lib'
-- Searching for a lib in the set "pnetcdf":
--   Searching for lib 'pnetcdf' ...
--     Found lib '/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libpnetcdf.dylib'
-- TPL_Pnetcdf_LIBRARIES='/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libpnetcdf.dylib'
-- Searching for headers in Pnetcdf_INCLUDE_DIRS='/Users/jacobfaibussowitsch/NoSync/petscpackages/i\
nclude'
-- Searching for a header file in the set "pnetcdf.h":
--   Searching for header 'pnetcdf.h' ...
--     Found header '/Users/jacobfaibussowitsch/NoSync/petscpackages/include/pnetcdf.h'
-- Found TPL 'Pnetcdf' include dirs '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'
-- TPL_Pnetcdf_INCLUDE_DIRS='/Users/jacobfaibussowitsch/NoSync/petscpackages/include'
Processing enabled TPL: Netcdf (enabled explicitly, disable with -DTPL_ENABLE_Netcdf=OFF)

Indicating that it does indeed find pnetcdf… but saves its location to “TPL_Pnetcdf_INCLUDE_DIRS” instead of the “PNetCDF_INCLUDE_DIRS” which it later searches. I have included both reconfigure scripts, and latest configure.log.

Best regards,

Jacob Faibussowitsch
(Jacob Fai - booss - oh - vitch)
Cell: (312) 694-3391
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