[petsc-dev] [petsc-users] (no subject)
Stefano Zampini
stefano.zampini at gmail.com
Wed Feb 27 18:22:44 CST 2019
This is how I fixed this. You should configure PETSc using these libraries from brew.
'--with-giflib-dir=/usr/local',
'--with-libjpeg-dir=/usr/local',
'--with-libpng-dir=/usr/local',
'--with-opengl-dir=/usr/X11',
'--with-zlib-dir=/usr/local/opt/zlib',
> On Feb 27, 2019, at 4:01 PM, DAFNAKIS PANAGIOTIS via petsc-users <petsc-users at mcs.anl.gov> wrote:
>
> Hi everybody,
>
> I am trying to install PETSc version 3.10.3 on OSX Sierra 10.13.6 with the following configure options
> ./configure --CC=mpicc --CXX=mpicxx --FC=mpif90 --PETSC_ARCH=sierra-dbg --with-debugging=1 --download-hypre=1 --with-x=0
>
> however I am getting the following error messages when I do 'make check'. See below the resulting message. Any suggestions?
>
> Thanks,
>
> --Panos
>
> panos at Sierra-iMac:~/Softwares/PETSc-Bitbucket/PETSc$ make PETSC_DIR=/Users/panos/Softwares/PETSc-Bitbucket/PETSc PETSC_ARCH=sierra-dbg check
> Running test examples to verify correct installation
> Using PETSC_DIR=/Users/panos/Softwares/PETSc-Bitbucket/PETSc and PETSC_ARCH=sierra-dbg
> make[2]: [ex19.PETSc] Error 2 (ignored)
> *******************Error detected during compile or link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> /Users/panos/Softwares/PETSc-Bitbucket/PETSc/src/snes/examples/tutorials ex19
> *********************************************************************************
> mpicc -o ex19.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Qunused-arguments -fvisibility=hidden -g3 -I/Users/panos/Softwares/PETSc-Bitbucket/PETSc/include -I/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/include `pwd`/ex19.c
> mpicc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Qunused-arguments -fvisibility=hidden -g3 -o ex19 ex19.o -Wl,-rpath,/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib -L/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib -Wl,-rpath,/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib -L/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib -Wl,-rpath,/usr/local/Cellar/mpich/3.3/lib -L/usr/local/Cellar/mpich/3.3/lib -Wl,-rpath,/usr/local/Cellar/gcc/8.3.0/lib/gcc/8/gcc/x86_64-apple-darwin17.7.0/8.3.0 -L/usr/local/Cellar/gcc/8.3.0/lib/gcc/8/gcc/x86_64-apple-darwin17.7.0/8.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/8.3.0/lib/gcc/8 -L/usr/local/Cellar/gcc/8.3.0/lib/gcc/8 -Wl,-rpath,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries -L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries -Wl,-rpath,/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources -L/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources -Wl,-rpath,/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources -L/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources -lpetsc -lHYPRE -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lGFXShared -lGLU -lGL -lGLImage -lCVMSPluginSupport -lFontParser -lFontRegistry -lJPEG -lTIFF -lPng -lGIF -lJP2 -lRadiance -lCoreVMClient -ldl
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/Versions/A/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/Versions/A/CoreFoundation are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//IOKit.framework/Versions/A/IOKit.tbd and library file /System/Library/Frameworks//IOKit.framework/Versions/A/IOKit are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator.tbd and library file /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//ApplicationServices.framework/Versions/A/ApplicationServices.tbd and library file /System/Library/Frameworks//ApplicationServices.framework/Versions/A/ApplicationServices are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CoreGraphics.framework/Versions/A/CoreGraphics.tbd and library file /System/Library/Frameworks//CoreGraphics.framework/Versions/A/CoreGraphics are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//Security.framework/Versions/A/Security.tbd and library file /System/Library/Frameworks//Security.framework/Versions/A/Security are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CoreServices.framework/Versions/A/CoreServices.tbd and library file /System/Library/Frameworks//CoreServices.framework/Versions/A/CoreServices are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//Foundation.framework/Versions/C/Foundation.tbd and library file /System/Library/Frameworks//Foundation.framework/Versions/C/Foundation are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//OpenCL.framework/Versions/A/OpenCL.tbd and library file /System/Library/Frameworks//OpenCL.framework/Versions/A/OpenCL are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//IOSurface.framework/Versions/A/IOSurface.tbd and library file /System/Library/Frameworks//IOSurface.framework/Versions/A/IOSurface are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CoreText.framework/Versions/A/CoreText.tbd and library file /System/Library/Frameworks//CoreText.framework/Versions/A/CoreText are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//ImageIO.framework/Versions/A/ImageIO.tbd and library file /System/Library/Frameworks//ImageIO.framework/Versions/A/ImageIO are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CFNetwork.framework/Versions/A/CFNetwork.tbd and library file /System/Library/Frameworks//CFNetwork.framework/Versions/A/CFNetwork are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//DiskArbitration.framework/Versions/A/DiskArbitration.tbd and library file /System/Library/Frameworks//DiskArbitration.framework/Versions/A/DiskArbitration are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//OpenGL.framework/Versions/A/OpenGL.tbd and library file /System/Library/Frameworks//OpenGL.framework/Versions/A/OpenGL are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CoreAudio.framework/Versions/A/CoreAudio.tbd and library file /System/Library/Frameworks//CoreAudio.framework/Versions/A/CoreAudio are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//AudioToolbox.framework/Versions/A/AudioToolbox.tbd and library file /System/Library/Frameworks//AudioToolbox.framework/Versions/A/AudioToolbox are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory.tbd and library file /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//ServiceManagement.framework/Versions/A/ServiceManagement.tbd and library file /System/Library/Frameworks//ServiceManagement.framework/Versions/A/ServiceManagement are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/PrivateFrameworks/APFS.framework/Versions/A/APFS.tbd and library file /System/Library/PrivateFrameworks/APFS.framework/Versions/A/APFS are out of sync. Falling back to library file for linking.
> Undefined symbols for architecture x86_64:
> "_jpeg_CreateCompress", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_destroy_compress", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_finish_compress", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_set_defaults", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_start_compress", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_std_error", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_stdio_dest", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_write_scanlines", referenced from:
> import-atom in libpetsc.dylib
> "_png_create_info_struct", referenced from:
> import-atom in libpetsc.dylib
> "_png_create_write_struct", referenced from:
> import-atom in libpetsc.dylib
> "_png_destroy_write_struct", referenced from:
> import-atom in libpetsc.dylib
> "_png_init_io", referenced from:
> import-atom in libpetsc.dylib
> "_png_set_IHDR", referenced from:
> import-atom in libpetsc.dylib
> "_png_set_PLTE", referenced from:
> import-atom in libpetsc.dylib
> "_png_set_longjmp_fn", referenced from:
> import-atom in libpetsc.dylib
> "_png_write_end", referenced from:
> import-atom in libpetsc.dylib
> "_png_write_info", referenced from:
> import-atom in libpetsc.dylib
> "_png_write_row", referenced from:
> import-atom in libpetsc.dylib
> ld: symbol(s) not found for architecture x86_64
> clang: error: linker command failed with exit code 1 (use -v to see invocation)
> make[3]: [ex19] Error 1 (ignored)
> /usr/bin/dsymutil ex19
> error: cannot parse the debug map for 'ex19': No such file or directory
> make[3]: *** [ex19] Error 1
> rm ex19.o
> 1,5c1,2
> < lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
> < 0 SNES Function norm 0.0406612
> < 1 SNES Function norm 4.12227e-06
> < 2 SNES Function norm 6.098e-11
> < Number of SNES iterations = 2
> ---
>> [proxy:0:0 at Sierra-iMac.local] HYDU_create_process (utils/launch/launch.c:74): execvp error on file ./ex19 (No such file or directory)
>> [proxy:0:0 at Sierra-iMac.local] HYDU_create_process (utils/launch/launch.c:74): execvp error on file ./ex19 (No such file or directory)
> /Users/panos/Softwares/PETSc-Bitbucket/PETSc/src/snes/examples/tutorials
> Possible problem with ex19_hypre, diffs above
> =========================================
> *******************Error detected during compile or link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> /Users/panos/Softwares/PETSc-Bitbucket/PETSc/src/snes/examples/tutorials ex5f
> *********************************************************
> mpif90 -c -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -I/Users/panos/Softwares/PETSc-Bitbucket/PETSc/include -I/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/include -o ex5f.o ex5f.F90
> mpif90 -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -o ex5f ex5f.o -Wl,-rpath,/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib -L/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib -Wl,-rpath,/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib -L/Users/panos/Softwares/PETSc-Bitbucket/PETSc/sierra-dbg/lib -Wl,-rpath,/usr/local/Cellar/mpich/3.3/lib -L/usr/local/Cellar/mpich/3.3/lib -Wl,-rpath,/usr/local/Cellar/gcc/8.3.0/lib/gcc/8/gcc/x86_64-apple-darwin17.7.0/8.3.0 -L/usr/local/Cellar/gcc/8.3.0/lib/gcc/8/gcc/x86_64-apple-darwin17.7.0/8.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/8.3.0/lib/gcc/8 -L/usr/local/Cellar/gcc/8.3.0/lib/gcc/8 -Wl,-rpath,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries -L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries -Wl,-rpath,/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources -L/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources -Wl,-rpath,/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources -L/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources -lpetsc -lHYPRE -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lGFXShared -lGLU -lGL -lGLImage -lCVMSPluginSupport -lFontParser -lFontRegistry -lJPEG -lTIFF -lPng -lGIF -lJP2 -lRadiance -lCoreVMClient -ldl
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.tbd and library file /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.tbd and library file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/Versions/A/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/Versions/A/CoreFoundation are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//IOKit.framework/Versions/A/IOKit.tbd and library file /System/Library/Frameworks//IOKit.framework/Versions/A/IOKit are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator.tbd and library file /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//ApplicationServices.framework/Versions/A/ApplicationServices.tbd and library file /System/Library/Frameworks//ApplicationServices.framework/Versions/A/ApplicationServices are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CoreGraphics.framework/Versions/A/CoreGraphics.tbd and library file /System/Library/Frameworks//CoreGraphics.framework/Versions/A/CoreGraphics are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//Security.framework/Versions/A/Security.tbd and library file /System/Library/Frameworks//Security.framework/Versions/A/Security are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CoreServices.framework/Versions/A/CoreServices.tbd and library file /System/Library/Frameworks//CoreServices.framework/Versions/A/CoreServices are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//Foundation.framework/Versions/C/Foundation.tbd and library file /System/Library/Frameworks//Foundation.framework/Versions/C/Foundation are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//OpenCL.framework/Versions/A/OpenCL.tbd and library file /System/Library/Frameworks//OpenCL.framework/Versions/A/OpenCL are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//IOSurface.framework/Versions/A/IOSurface.tbd and library file /System/Library/Frameworks//IOSurface.framework/Versions/A/IOSurface are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CoreText.framework/Versions/A/CoreText.tbd and library file /System/Library/Frameworks//CoreText.framework/Versions/A/CoreText are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//ImageIO.framework/Versions/A/ImageIO.tbd and library file /System/Library/Frameworks//ImageIO.framework/Versions/A/ImageIO are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CFNetwork.framework/Versions/A/CFNetwork.tbd and library file /System/Library/Frameworks//CFNetwork.framework/Versions/A/CFNetwork are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//DiskArbitration.framework/Versions/A/DiskArbitration.tbd and library file /System/Library/Frameworks//DiskArbitration.framework/Versions/A/DiskArbitration are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//OpenGL.framework/Versions/A/OpenGL.tbd and library file /System/Library/Frameworks//OpenGL.framework/Versions/A/OpenGL are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//CoreAudio.framework/Versions/A/CoreAudio.tbd and library file /System/Library/Frameworks//CoreAudio.framework/Versions/A/CoreAudio are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//AudioToolbox.framework/Versions/A/AudioToolbox.tbd and library file /System/Library/Frameworks//AudioToolbox.framework/Versions/A/AudioToolbox are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory.tbd and library file /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/Frameworks//ServiceManagement.framework/Versions/A/ServiceManagement.tbd and library file /System/Library/Frameworks//ServiceManagement.framework/Versions/A/ServiceManagement are out of sync. Falling back to library file for linking.
> ld: warning: text-based stub file /System/Library/PrivateFrameworks/APFS.framework/Versions/A/APFS.tbd and library file /System/Library/PrivateFrameworks/APFS.framework/Versions/A/APFS are out of sync. Falling back to library file for linking.
> Undefined symbols for architecture x86_64:
> "_jpeg_CreateCompress", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_destroy_compress", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_finish_compress", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_set_defaults", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_start_compress", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_std_error", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_stdio_dest", referenced from:
> import-atom in libpetsc.dylib
> "_jpeg_write_scanlines", referenced from:
> import-atom in libpetsc.dylib
> "_png_create_info_struct", referenced from:
> import-atom in libpetsc.dylib
> "_png_create_write_struct", referenced from:
> import-atom in libpetsc.dylib
> "_png_destroy_write_struct", referenced from:
> import-atom in libpetsc.dylib
> "_png_init_io", referenced from:
> import-atom in libpetsc.dylib
> "_png_set_IHDR", referenced from:
> import-atom in libpetsc.dylib
> "_png_set_PLTE", referenced from:
> import-atom in libpetsc.dylib
> "_png_set_longjmp_fn", referenced from:
> import-atom in libpetsc.dylib
> "_png_write_end", referenced from:
> import-atom in libpetsc.dylib
> "_png_write_info", referenced from:
> import-atom in libpetsc.dylib
> "_png_write_row", referenced from:
> import-atom in libpetsc.dylib
> ld: symbol(s) not found for architecture x86_64
> collect2: error: ld returned 1 exit status
> make[3]: [ex5f] Error 1 (ignored)
> rm ex5f.o
> Completed test examples
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20190227/d101ea47/attachment-0001.html>
More information about the petsc-dev
mailing list