[petsc-dev] Errors from PETSc 3.11 and 3.12 headers
Balay, Satish
balay at mcs.anl.gov
Sun Dec 22 13:18:49 CST 2019
I guess one way to work around this issue is:
diff --git a/include/petscksp.h b/include/petscksp.h
index b75810337b..a201c97d3e 100644
--- a/include/petscksp.h
+++ b/include/petscksp.h
@@ -450,8 +450,6 @@ typedef enum {/* converged */
KSP_DIVERGED_NANORINF = -9,
KSP_DIVERGED_INDEFINITE_MAT = -10,
KSP_DIVERGED_PC_FAILED = -11,
- KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED = -11,
-
KSP_CONVERGED_ITERATING = 0} KSPConvergedReason;
PETSC_EXTERN const char *const*KSPConvergedReasons;
Satish
On Sun, 22 Dec 2019, Balay, Satish wrote:
> This error is strange. The issue does not come up in petsc build - but in petsc4py build.
>
> I see the petsc4py build is with:
>
> >>>>>>
> + CFLAGS=' -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic'
>
> mpicc -pthread -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O3 -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DPETSC_DIR=/usr -I/usr/include/openmpi-x86_64 -I/usr/include/openmpi-x86_64/hypre -I/usr/lib64/gfortran/modules/openmpi/petsc -I/usr/include/openmpi-x86_64/petsc -I/usr/include -Isrc/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/PETSc.c -o build/temp.linux-x86_64-3.6/src/PETSc.o
> <<<
>
> I've attempted a petsc+petsc4py build using both the following on fedora-31 [with petsc-3.12/maint] - and there were no errors
>
> >>>
> CFLAGS=' -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic'
>
> CFLAGS='-fexceptions -fPIC -fstack-protector-strong -g -grecord-gcc-switches -m64 -mtune=generic -O2 -O3 --param=ssp-buffer-size=4 -pipe -pthread -Wall -Wp,-D_FORTIFY_SOURCE=2'
>
> <<<<<
>
> gcc (GCC) 9.2.1 20190827 (Red Hat 9.2.1-1)
>
> petscconf.h has:
>
> #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated))
> #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated))
> #define PETSC_DEPRECATED_MACRO(why) _Pragma(why)
> #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated))
>
>
> Satish
>
> On Sun, 22 Dec 2019, Smith, Barry F. wrote:
>
> >
> > Please send configure.log and /usr/include/openmpi-x86_64/petsc/petscconf.h
> >
> > In theory our configure checks if deprecated can be used for Enums but perhaps our test is not complete.
> >
> > Barry
> >
> >
> > > On Dec 22, 2019, at 12:01 PM, Antonio Trande <anto.trande at gmail.com> wrote:
> > >
> > > Hi all.
> > >
> > > I don't know of these are errors related to petsc4py or to PETSc, i'm
> > > writing a mail to this mailing list too.
> > > Issue reported to petsc4py folks:
> > > https://bitbucket.org/petsc/petsc4py/issues/133/compiling-petsc4py-3110-against-petsc-3113
> > >
> > >
> > > In file included from /usr/include/openmpi-x86_64/petsc/petscsys.h:14:0,
> > > from /usr/include/openmpi-x86_64/petsc/petscbag.h:4,
> > > from /usr/include/openmpi-x86_64/petsc/petsc.h:5,
> > > from src/petsc4py.PETSc.c:591,
> > > from src/PETSc.c:4:
> > > /usr/include/openmpi-x86_64/petsc/petscconf.h:85:36: error: expected ','
> > > or '}' before '__attribute'
> > > #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated))
> > > ^
> > > /usr/include/openmpi-x86_64/petsc/petscksp.h:430:76: note: in expansion
> > > of macro 'PETSC_DEPRECATED_ENUM'
> > > #define KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED
> > > KSP_DIVERGED_PCSETUP_FAILED PETSC_DEPRECATED_ENUM("Use
> > > KSP_DIVERGED_PC_FAILED (since v3.11)")
> > >
> > > ^
> > > /usr/include/openmpi-x86_64/petsc/petscksp.h:452:15: note: in expansion
> > > of macro 'KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED'
> > > KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED = -11,
> > > ^
> > > In file included from src/PETSc.c:4:0:
> > > src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_KSP_Converged':
> > > src/petsc4py.PETSc.c:35723:22: error: 'KSP_CONVERGED_ITERATING'
> > > undeclared (first use in this function)
> > > (__pyx_v_r[0]) = KSP_CONVERGED_ITERATING;
> > > ^
> > > src/petsc4py.PETSc.c:35723:22: note: each undeclared identifier is
> > > reported only once for each function it appears in
> > > src/petsc4py.PETSc.c: In function
> > > '__pyx_pf_8petsc4py_5PETSc_3KSP_50callConvergenceTest':
> > > src/petsc4py.PETSc.c:171473:20: error: 'KSP_CONVERGED_ITERATING'
> > > undeclared (first use in this function)
> > > __pyx_v_reason = KSP_CONVERGED_ITERATING;
> > > ^
> > > src/petsc4py.PETSc.c: In function
> > > '__pyx_pf_8petsc4py_5PETSc_3KSP_112getConvergedReason':
> > > src/petsc4py.PETSc.c:174687:20: error: 'KSP_CONVERGED_ITERATING'
> > > undeclared (first use in this function)
> > > __pyx_v_reason = KSP_CONVERGED_ITERATING;
> > > ^
> > > src/petsc4py.PETSc.c: In function '__pyx_pymod_exec_PETSc':
> > > src/petsc4py.PETSc.c:303605:51: error: 'KSP_CONVERGED_ITERATING'
> > > undeclared (first use in this function)
> > > __pyx_t_7 =
> > > __Pyx_PyInt_From_KSPConvergedReason(KSP_CONVERGED_ITERATING); if
> > > (unlikely(!__pyx_t_7)) __PYX_ERR(37, 64, __pyx_L1_error)
> > > ^
> > > error: command 'mpicc' failed with exit status
> > >
> > >
> > > --
> > > ---
> > > Antonio Trande
> > > Fedora Project
> > > mailto 'sagitter at fedoraproject dot org'
> > > GPG key: 0x7B30EE04E576AA84
> > > GPG key server: https://keys.openpgp.org/
> > >
> >
>
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