[petsc-dev] error with --download-amgx

Balay, Satish balay at mcs.anl.gov
Tue Dec 3 22:00:24 CST 2019 

Its from the attached configure.log [from a prior e-mail on this
thread] - and this flag is not passed in from petsc configure to amgx
cmake - so it must be somehow set internally in this package.

Satish

On Wed, 4 Dec 2019, Smith, Barry F. wrote:

> 
> > Also - its best to avoid -Werror in externalpackage builds..
> 
>   Hmm, my branch uses the CMake package to do the install  (it has no custom code) so is this a bug in package.py that it doesn't strip out the -Werror when passing stuff to cmake?
> 
>   There is not enough information your email for me to determine where this message you printed below came from. Did it come from my branch?
> 
>    Barry
> 
> 
> > On Dec 3, 2019, at 9:29 PM, Balay, Satish <balay at mcs.anl.gov> wrote:
> > 
> >>>>> 
> > autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/cmake -E remove /autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.amgx/petsc-build/core/CMakeFiles/amgx_core.dir/src/classical/interpolators/./amgx_core_generated_common.cu.o
> > /sw/summit/cuda/10.1.168/bin/nvcc -M -D__CUDACC__ /autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.amgx/plugin_config.cu -o /autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.amgx/petsc-build/base/CMakeFiles/amgx_base.dir/__/amgx_base_generated_plugin_config.cu.o.NVCC-depend -m64 -Xcompiler ,\"-fstack-protector\",\"-g\",\"-O2\",\"-fPIC\",\"-Wno-terminate\",\"-static-libgcc\",\"-fopenmp\",\"-DRAPIDJSON_DEFINED\",\"-DAMGX_WITH_MPI\",\"-fstack-protector\",\"-g\",\"-O2\",\"-fPIC\" -ccbin mpicxx -gencode=arch=compute_35,code=\"sm_35,compute_35\" -gencode=arch=compute_52,code=\"sm_52,compute_52\" -gencode=arch=compute_60,code=\"sm_60,compute_60\" -gencode=arch=compute_70,code=\"sm_70,compute_70\" -O3 -DNDEBUG -std=c++11 --Werror cross-execution-space-call -DNVCC -I/autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.amgx/../../thrust -I/autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git..amgx/base/include -I/sw/summit/cuda/10.1.168/include -I/autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.amgx/external/rapidjson/include
> > -- Removing /autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.amgx/petsc-build/base/CMakeFiles/amgx_base.dir/src/./amgx_base_generated_device_properties.cu.o
> > <<<<<<
> > 
> > Also - its best to avoid -Werror in externalpackage builds..
> > 
> > Satish
> > 
> > On Tue, 3 Dec 2019, Mark Adams wrote:
> > 
> >> Barry,
> >> 
> >> First, there is a fix that we need in the AMGx repo (appended).
> >> 
> >> I've never had problems like this not being able to build. I will try to
> >> build my AMGx manually to check.
> >> 
> >> 21:31 master *= ~/AMGX$ git diff
> >> diff --git a/base/include/amgx_c_wrappers.inl
> >> b/base/include/amgx_c_wrappers.inl
> >> index 42496f0..ed9f0e1 100644
> >> --- a/base/include/amgx_c_wrappers.inl
> >> +++ b/base/include/amgx_c_wrappers.inl
> >> @@ -643,7 +643,7 @@ inline AMGX_Mode get_mode_from(const Envelope &envl)
> >>     {
> >>         //throws...
> >>         //
> >> -        FatalError("Mode not found.\n", AMGX_ERR_BAD_MODE);
> >> +        // FatalError("Mode not found.\n", AMGX_ERR_BAD_MODE);
> >>     }
> >> 
> >>     AMGX_Mode mode = static_cast<AMGX_Mode>(itFound->second);
> >> @@ -1125,4 +1125,4 @@ inline bool remove_managed_matrix(AMGX_matrix_handle
> >> envl)
> >> } //namespace unnamed
> >> 
> >> On Tue, Dec 3, 2019 at 8:50 PM Smith, Barry F. <bsmith at mcs.anl.gov> wrote:
> >> 
> >>> 
> >>>  The first error is
> >>> 
> >>> nvcc error   : 'cicc' died due to signal 9 (Kill signal)
> >>> nvcc error   : 'cicc' died due to signal 9 (Kill signal)
> >>> 
> >>> later
> >>> 
> >>> 
> >>> /autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.amgx/base/src/
> >>> amgx_c_common.cu(77): catastrophic error: error while writing generated
> >>> C++ file: Cannot allocate memory
> >>> 
> >>> 1 catastrophic error detected in the compilation of
> >>> "/tmp/tmpxft_000038d3_00000000-4_amgx_c_common.cpp4.ii".
> >>> 
> >>>  Whatever machine you are compiling on seems to be overloaded. What does
> >>> top show? Can you log into "different" compiler servers on Summit?
> >>> 
> >>>  I run the install on the utk system with no problems like this.
> >>> 
> >>> PETSc configure is deciding
> >>> 
> >>> TEST configureMakeNP from
> >>> config.packages.make(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/make.py:168)
> >>> TESTING: configureMakeNP from
> >>> config.packages.make(config/BuildSystem/config/packages/make.py:168)
> >>>  check no of cores on the build machine [perhaps to do make '-j ncores']
> >>>          module multiprocessing found 128 cores: using make_np = 59
> >>>            Defined make macro "MAKE_NP" to "59"
> >>>            Defined make macro "MAKE_TEST_NP" to "49"
> >>>            Defined make macro "MAKE_LOAD" to "166.4"
> >>>            Defined make macro "NPMAX" to "128"
> >>> 
> >>> then somehow this gets passed down to the AMGX cmake. Perhaps you could
> >>> try less greedy numbers.
> >>> 
> >>> Executing: /usr/bin/gmake -j59 -l166.4
> >>> 
> >>> Perhaps try
> >>> 
> >>> --with-make-np=20
> >>> 
> >>> --with-make-load=20
> >>> 
> >>> Barry
> >>> 
> >>> 
> >>> 
> >>>> On Dec 3, 2019, at 4:17 PM, Mark Adams <mfadams at lbl.gov> wrote:
> >>>> 
> >>>> That might have been from an old .nsf file. Here is a new one. I'm sure
> >>> I have the disk space.
> >>>> 
> >>>> On Tue, Dec 3, 2019 at 4:51 PM Mark Adams <mfadams at lbl.gov> wrote:
> >>>> Humm, clean up and seem to have different error:
> >>>> 
> >>>> 
> >>>> On Tue, Dec 3, 2019 at 3:45 PM Matthew Knepley <knepley at gmail.com>
> >>> wrote:
> >>>> Could you have run out of disk space?
> >>>> 
> >>>> /usr/bin/ranlib: libamgx_base.a: Input/output error
> >>>> gmake[2]: *** [base/libamgx_base.a] Error 1
> >>>> gmake[2]: *** Deleting file `base/libamgx_base.a'
> >>>> gmake[1]: *** [base/CMakeFiles/amgx_base.dir/all] Error 2
> >>>> gmake: *** [all] Error 2
> >>>> 
> >>>>   Matt
> >>>> 
> >>>> On Tue, Dec 3, 2019 at 1:44 PM Mark Adams <mfadams at lbl.gov> wrote:
> >>>> 
> >>>> 
> >>>> 
> >>>> --
> >>>> What most experimenters take for granted before they begin their
> >>> experiments is infinitely more interesting than any results to which their
> >>> experiments lead.
> >>>> -- Norbert Wiener
> >>>> 
> >>>> https://www.cse.buffalo.edu/~knepley/
> >>>> <configure.log>
> >>> 
> >>> 
> >> 
>

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