[petsc-dev] Error running on Titan with GPUs & GNU

[Mark Adams]

And a debug build seems to work:

21:04 1 master= /lustre/atlas/proj-shared/geo127/petsc$ make
PETSC_DIR=/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda
PETSC_ARCH="" test
Running test examples to verify correct installation
Using
PETSC_DIR=/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda
and PETSC_ARCH=
*******************Error detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/lustre/atlas/proj-shared/geo127/petsc/src/snes/examples/tutorials ex19
*********************************************************************************
cc -o ex19.o -c -g
 -I/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/include
  `pwd`/ex19.c
cc -g  -o ex19 ex19.o
-L/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/lib
-Wl,-rpath,/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/lib
-L/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/lib
-lpetsc -lHYPRE -lflapack -lfblas -lparmetis -lmetis -ldl
/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/lib/libpetsc.a(dlimpl.o):
In function `PetscDLOpen':
/lustre/atlas1/geo127/proj-shared/petsc/src/sys/dll/dlimpl.c:108: warning:
Using 'dlopen' in statically linked applications requires at runtime the
shared libraries from the glibc version used for linking
/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/lib/libpetsc.a(send.o):
In function `PetscOpenSocket':
/lustre/atlas1/geo127/proj-shared/petsc/src/sys/classes/viewer/impls/socket/send.c:108:
warning: Using 'gethostbyname' in statically linked applications requires
at runtime the shared libraries from the glibc version used for linking
true ex19
rm ex19.o
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI
process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
Number of SNES iterations = 2
Application 19081049 resources: utime ~1s, stime ~1s, Rss ~17112, inblocks
~36504, outblocks ~111043
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI
processes
See http://www.mcs.anl.gov/petsc/documentation/faq.html
lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
Number of SNES iterations = 2
Application 19081050 resources: utime ~1s, stime ~1s, Rss ~19816, inblocks
~36527, outblocks ~111043
5a6
> Application 19081051 resources: utime ~1s, stime ~0s, Rss ~13864,
inblocks ~36527, outblocks ~111043
/lustre/atlas/proj-shared/geo127/petsc/src/snes/examples/tutorials
Possible problem with ex19_hypre, diffs above
=========================================
*******************Error detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/lustre/atlas/proj-shared/geo127/petsc/src/snes/examples/tutorials ex5f
*********************************************************
ftn -c -g
-I/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/include
-o ex5f.o ex5f.F90
ftn -g   -o ex5f ex5f.o
-L/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/lib
-Wl,-rpath,/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/lib
-L/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/lib
-lpetsc -lHYPRE -lflapack -lfblas -lparmetis -lmetis -ldl
/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/lib/libpetsc.a(dlimpl.o):
In function `PetscDLOpen':
/lustre/atlas1/geo127/proj-shared/petsc/src/sys/dll/dlimpl.c:108: warning:
Using 'dlopen' in statically linked applications requires at runtime the
shared libraries from the glibc version used for linking
/lustre/atlas/proj-shared/geo127/petsc_titan_dbg64idx_gnu_cuda/lib/libpetsc.a(send.o):
In function `PetscOpenSocket':
/lustre/atlas1/geo127/proj-shared/petsc/src/sys/classes/viewer/impls/socket/send.c:108:
warning: Using 'gethostbyname' in statically linked applications requires
at runtime the shared libraries from the glibc version used for linking
rm ex5f.o
Possible error running Fortran example src/snes/examples/tutorials/ex5f
with 1 MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
Number of SNES iterations =     4
Application 19081055 resources: utime ~1s, stime ~0s, Rss ~12760, inblocks
~36800, outblocks ~111983
Completed test examples
21:06 master= /lustre/atlas/proj-shared/geo127/petsc$
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