[petsc-dev] problem with hypre with '--with-openmp=1'

[Mark Adams]

On Tue, Jun 26, 2018 at 12:29 AM Balay, Satish <balay at mcs.anl.gov> wrote:

> Perhaps petsc built with openmp is triggering the problem.
>
>
>
> You might want to install hyper separately with openmp. And then install
> petsc with this prebuilt hypre and see if the problem persists
>

I am not finding the newest version of hypre on their web page (I see
2.11.2 but the latest is 2.14.0). Could we just build PETSc's download and
point to it? Or copy the whole thing out?

We've never build Hypre AFAIK. Does anyone have any scripts or something
for KNL?

Thanks,


>
>
> Satish
>
>
> ------------------------------
> *From:* petsc-dev <petsc-dev-bounces at mcs.anl.gov> on behalf of Yang,
> Ulrike Meier <yang11 at llnl.gov>
> *Sent:* Monday, June 25, 2018 8:20:58 PM
> *To:* Mark Adams; Smith, Barry F.
> *Cc:* For users of the development version of PETSc; treb at lbl.gov
> Trebotich
> *Subject:* Re: [petsc-dev] problem with hypre with '--with-openmp=1'
>
>
> Hi Mark,
>
> I don’t have an account on KNL and have not tested hypre there with
> OpenMP. I believe other people have used it however, but I haven’t heard
> about any non-convergence issues before now.
>
> Ulrike
>
>
>
> *From:* Mark Adams <mfadams at lbl.gov>
> *Sent:* Friday, June 22, 2018 4:28 PM
> *To:* Smith, Barry F. <bsmith at mcs.anl.gov>
> *Cc:* For users of the development version of PETSc <petsc-dev at mcs.anl.gov>;
> Yang, Ulrike Meier <yang11 at llnl.gov>; treb at lbl.gov Trebotich <treb at lbl.gov
> >
> *Subject:* Re: [petsc-dev] problem with hypre with '--with-openmp=1'
>
>
>
>
>
> On Fri, Jun 22, 2018 at 4:39 PM Smith, Barry F. <bsmith at mcs.anl.gov>
> wrote:
>
>
>
> > On Jun 22, 2018, at 3:33 PM, Mark Adams <mfadams at lbl.gov> wrote:
> >
> > We are using KNL (Cori) and hypre is not working when configured with
> '--with-openmp=1', even when not using threads (as far as I can tell, I
> never use threads).
>
>    It does seem to run correctly without the --with-openmp option?
>
>
>
> Yes. And I've run it through valgrind.
>
>
>
> Ulrike: have you tested on KNL with openMP?
>
>
>
>
>    PETSc code does not know about --with-openmp at all so my guess is some
> bug in the compiler when building hypre with OpenMP.
>
>    Barry
>
> >
> > Hypre is not converging, for instance with an optimized build:
> >
> > srun -n 1 ./ex56 -pc_type hypre -ksp_monitor -ksp_converged_reason
> -ksp_type cg -pc_hypre_type boomeramg
> > OMP: Warning #239: KMP_AFFINITY: granularity=fine will be used.
> >   0 KSP Residual norm 7.366251922394e+22
> >   1 KSP Residual norm 3.676434682799e+22
> > Linear solve did not converge due to DIVERGED_INDEFINITE_PC iterations 2
> >
> > Interestingly in debug mode it almost looks good but it is dying:
> >
> > 05:09 nid02516 maint *=
> ~/petsc_install/petsc/src/ksp/ksp/examples/tutorials$ make
> PETSC_DIR=/global/homes/m/madams/petsc_install/petsc-cori-knl-dbg64-intel-omp
> PETSC_ARCH="" run
> > srun -n 1 ./ex56 -pc_type hypre -ksp_monitor -ksp_converged_reason
> -ksp_type cg -pc_hypre_type boomeramg
> > OMP: Warning #239: KMP_AFFINITY: granularity=fine will be used.
> >   0 KSP Residual norm 7.882081712007e+02
> >   1 KSP Residual norm 2.500214073037e+02
> >   2 KSP Residual norm 3.371746347713e+01
> >   3 KSP Residual norm 2.918759396143e+00
> >   4 KSP Residual norm 9.006505495017e-01
> > Linear solve did not converge due to DIVERGED_INDEFINITE_PC iterations 5
> >
> > This test runs fine on Xeon nodes. I assume that Hypre has been tested
> on KNL. GAMG runs fine, of coarse and the initial residual is similar to
> this debug run.
> >
> > Could PETSc be messing up the matrix conversion to hypre
> '--with-openmp=1' ?
> >
> > Any ideas?
> >
> > Thanks,
> > Mark
> >
>
>
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