[petsc-dev] [petsc-users] Error during PETSc build on Edison

[Smith, Barry F.]

  Satish,

   Master now should not require this horrible flags. Could you do a test build with master on edison without these flags and see what happens?

   Barry


> On Jan 29, 2018, at 10:12 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> 
> 1. cray provides prebuilt petsc libraries. Does that work for you?
> 
> 2. verylikely  you need:
> 
> --with-clib-autodetect=0
> --with-cxxlib-autodetect=0
> LIBS=-lstdc++
> 
> If it doesn't work - send configure.log
> 
> Satish
> 
> 
> On Tue, 30 Jan 2018, Amneet Bhalla wrote:
> 
>> Hi,
>> 
>> I am trying to build PETSc (v3.7.7) locally in my home directory on NERSC
>> (Edison).
>> However, I am getting the following error during the configuration stage.
>> 
>> ===============================================================================
>> 
>>              TESTING: checkFortranNameMangling from
>> config.compilers(config/BuildSystem/config/compilers.py:653)
>> 
>> *******************************************************************************
>> 
>>         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
>> details):
>> 
>> -------------------------------------------------------------------------------
>> 
>> Unknown Fortran name mangling: Are you sure the C and Fortran compilers are
>> compatible?
>> 
>>  Perhaps one is 64 bit and one is 32 bit?
>> 
>> -------------------------------------------------------------------------------
>> 
>> Unknown Fortran name mangling: Are you sure the C and Fortran compilers are
>> compatible?
>> 
>>  Perhaps one is 64 bit and one is 32 bit?
>> 
>> *******************************************************************************
>> 
>>  File "./config/configure.py", line 405, in petsc_configure
>> 
>>    framework.configure(out = sys.stdout)
>> 
>>  File
>> "/global/u2/a/apbhalla/softwares/PETSc-BitBucket/PETSc/config/BuildSystem/config/framework.py",
>> line 1091, in configure
>> 
>>    self.processChildren()
>> 
>>  File
>> "/global/u2/a/apbhalla/softwares/PETSc-BitBucket/PETSc/config/BuildSystem/config/framework.py",
>> line 1080, in processChildren
>> 
>>    self.serialEvaluation(self.childGraph)
>> 
>>  File
>> "/global/u2/a/apbhalla/softwares/PETSc-BitBucket/PETSc/config/BuildSystem/config/framework.py",
>> line 1061, in serialEvaluation
>> 
>>    child.configure()
>> 
>>  File
>> "/global/u2/a/apbhalla/softwares/PETSc-BitBucket/PETSc/config/BuildSystem/config/compilers.py",
>> line 1458, in configure
>> 
>>    self.executeTest(self.checkFortranNameMangling)
>> 
>>  File
>> "/global/u2/a/apbhalla/softwares/PETSc-BitBucket/PETSc/config/BuildSystem/config/base.py",
>> line 126, in executeTest
>> 
>>    ret = test(*args,**kargs)
>> 
>>  File
>> "/global/u2/a/apbhalla/softwares/PETSc-BitBucket/PETSc/config/BuildSystem/config/compilers.py",
>> line 675, in checkFortranNameMangling
>> 
>>    raise RuntimeError('Unknown Fortran name mangling: Are you sure the C
>> and Fortran compilers are compatible?\n  Perhaps one is 64 bit and one is
>> 32 bit?\n'+mess)
>> 
>> 
>> 
>> 
>> 
>> I using the following configure options
>> 
>> ./config/configure.py --CC=cc --CXX=CC --FC=ftn --with-default-arch=0
>> --PETSC_ARCH=linux-opt --with-debugging=0 --with-c++-support=1
>> --with-hypre=1 --download-hypre=1 --COPTFLAGS="-O3" --CXXOPTFLAGS="-O3"
>> --FOPTFLAGS="-O3" --with-x=0
>> 
>> 
>> I have swapped the Prgn-Env-intel with Prgn-Env-gnu.
>> 
>> The compiler commands return the following:
>> 
>> % cc --version
>> 
>> gcc (GCC) 7.1.0 20170502 (Cray Inc.)
>> 
>> Copyright (C) 2017 Free Software Foundation, Inc.
>> 
>> This is free software; see the source for copying conditions.  There is NO
>> 
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>> 
>> 
>> % which cc
>> 
>> /opt/cray/pe/craype/2.5.12/bin/cc
>> 
>> 
>> % CC --version
>> 
>> g++ (GCC) 7.1.0 20170502 (Cray Inc.)
>> 
>> Copyright (C) 2017 Free Software Foundation, Inc.
>> 
>> This is free software; see the source for copying conditions.  There is NO
>> 
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>> 
>> 
>> % which CC
>> 
>> /opt/cray/pe/craype/2.5.12/bin/CC
>> 
>> 
>> 
>> % ftn --version
>> 
>> GNU Fortran (GCC) 7.1.0 20170502 (Cray Inc.)
>> 
>> Copyright (C) 2017 Free Software Foundation, Inc.
>> 
>> This is free software; see the source for copying conditions.  There is NO
>> 
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>> 
>> 
>> % which ftn
>> 
>> /opt/cray/pe/craype/2.5.12/bin/ftn
>> 
>> 
>> 
>> Any suggestions?
>> 
>> Thanks,
>> 
>> 
>> 
>