[petsc-dev] building on KNL

[Matthew Knepley]

On Sat, Mar 11, 2017 at 3:13 PM, Mark Adams <mfadams at lbl.gov> wrote:

> On Sat, Mar 11, 2017 at 1:43 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
> >
> >    What happens if you just add the module udreg?
>
> It did not help. There is a udreg in PKG_CONFIG_PATH
>

This is not exactly the same: https://github.com/LLNL/spack/issues/2166

but it does show the hopelessness of using pkg-config :) i cannot believe
Jed
is advocating using that.

Mark, do you actually see 'cray-udreg.pc' in PKG_CONFIG_PATH?

   Matt


> >
> >    I would never rely on "default" modules, make sure you set the
> modules you need and make sure they get set for both the front end and the
> compute nodes.
> >
> >   Barry
> >
> >> On Mar 11, 2017, at 11:55 AM, Mark Adams <mfadams at lbl.gov> wrote:
> >>
> >> Well, I get the same error now with testing. I will ask NERSC.
> >> PKG_CONFIG_PATH does have a path to libudreg.so.0.2.3, but that does
> >> not seem to be enough.
> >>
> >> 09:52 nid02358  ~/petsc_install/petsc$ make
> >> PETSC_DIR=/global/homes/m/madams/petsc_install/petsc-
> cori-knl-opt64-intel
> >> PETSC_ARCH="" test
> >> Running test examples to verify correct installation
> >> Using PETSC_DIR=/global/homes/m/madams/petsc_install/petsc-
> cori-knl-opt64-intel
> >> and PETSC_ARCH=
> >> /global/homes/m/madams/petsc_install/petsc-cori-knl-opt64-
> intel/lib/petsc/conf/rules:448:
> >> recipe for target 'ex19.PETSc' failed
> >> gmake[2]: [ex19.PETSc] Error 2 (ignored)
> >> *******************Error detected during compile or
> >> link!*******************
> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> /global/homes/m/madams/petsc_install/petsc/src/snes/examples/tutorials
> >> ex19
> >> ************************************************************
> *********************
> >> cc -o ex19.o -c -g -O3 -fp-model fast -xMIC-AVX512 -qopt-report=5
> >> -hcpu=mic-knl -qopenmp-simd
> >> -I/global/homes/m/madams/petsc_install/petsc-cori-knl-
> opt64-intel/include
> >> -I/global/homes/m/madams/petsc_install/petsc-cori-knl-
> opt64-intel/include
> >> -I/global/homes/m/madams/petsc_install/petsc-cori-knl-
> opt64-intel/include
> >>   `pwd`/ex19.c
> >> Error invoking pkg-config!
> >> Package cray-udreg was not found in the pkg-config search path.
> >> Perhaps you should add the directory containing `cray-udreg.pc'
> >> to the PKG_CONFIG_PATH environment variable
> >> Package 'cray-udreg', required by 'mpich', not found
> >> /global/homes/m/madams/petsc_install/petsc-cori-knl-opt64-
> intel/lib/petsc/conf/rules:399:
> >> recipe for target 'ex19.o' failed
> >> gmake[3]: *** [ex19.o] Error 1
> >>
> >> On Sat, Mar 11, 2017 at 12:17 PM, Mark Adams <mfadams at lbl.gov> wrote:
> >>> I tried running in batch=1 and that seems to have fixed it. Default
> >>> modules in the KNL compute nodes are different, that may have caused
> >>> the problem.
> >>> Thanks,
> >>>
> >>> On Sat, Mar 11, 2017 at 11:22 AM, Matthew Knepley <knepley at gmail.com>
> wrote:
> >>>> Looks like a module problem
> >>>>
> >>>> Executing: cc -c -o /tmp/petsc-7rDzhd/config.setCompilers/conftest.o
> >>>> -I/tmp/petsc-7rDzhd/config.setCompilers
> >>>> /tmp/petsc-7rDzhd/config.setCompilers/conftest.c
> >>>> Possible ERROR while running compiler: exit code 256
> >>>> stderr:
> >>>> Error invoking pkg-config!
> >>>> Package cray-udreg was not found in the pkg-config search path.
> >>>> Perhaps you should add the directory containing `cray-udreg.pc'
> >>>> to the PKG_CONFIG_PATH environment variable
> >>>> Package 'cray-udreg', required by 'mpich', not found
> >>>> Source:
> >>>> #include "confdefs.h"
> >>>> #include "conffix.h"
> >>>>
> >>>> int main() {
> >>>> ;
> >>>>  return 0;
> >>>> }
> >>>>              Popping language C
> >>>>          Error testing C compiler: Cannot compile C with cc.
> >>>>            Deleting "CC"
> >>>>
> >>>>   Matt
> >>>>
> >>>> On Sat, Mar 11, 2017 at 8:43 AM, Mark Adams <mfadams at lbl.gov> wrote:
> >>>>>
> >>>>> I have been using Cori/KNL with Intel MPI and want to move to
> cray-mpi
> >>>>> and am having an error with cc.
> >>>>>
> >>>>> 06:42 1 cori06 maint= ~/petsc_install/petsc$ cc --version
> >>>>> icc (ICC) 17.0.1 20161005
> >>>>> Copyright (C) 1985-2016 Intel Corporation.  All rights reserved.
> >>>>
> >>>>
> >>>>
> >>>>
> >>>> --
> >>>> What most experimenters take for granted before they begin their
> experiments
> >>>> is infinitely more interesting than any results to which their
> experiments
> >>>> lead.
> >>>> -- Norbert Wiener
> >
>



-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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