[petsc-dev] PETSc release?

Kong, Fande fande.kong at inl.gov
Mon Jul 24 11:17:52 CDT 2017

On Mon, Jul 24, 2017 at 9:36 AM, Jed Brown <jed at jedbrown.org> wrote:

> "Kong, Fande" <fande.kong at inl.gov> writes:
> > On Sun, Jul 23, 2017 at 5:31 PM, Jed Brown <jed at jedbrown.org> wrote:
> >
> >> Barry Smith <bsmith at mcs.anl.gov> writes:
> >>
> >> >    Anything stopping us from making a PETSc release?
> >>
> >> I need to finish/test the SF support for MPIUNI that you asked me to do
> >> in June.
> >>
> >> I've also been meaning to add hashtable support for assembly when people
> >> don't preallocate.  I think we should make it automatic.  It isn't much
> >> code and would save the weekly assembly performance emails and would
> >> help a lot for model coupling where our preallocation interfaces (for
> >> off-diagonal blocks) are terrible and the requisite user code is
> >> arguably dirtier than assembly itself.
> >>
> >
> >
> > I am so interested in this.  I am having hard time to make the
> > preallocation right for users because they have all kinds of crazy
> physics
> > that coupling different PDEs together based on their own rules.  So if we
> > could make the preallocate work automatically, it would be great.
> >
> > If we have this code in, the preallocation is not necessary for users any
> > more?  Still worthwhile to  have the right preallocation if possible?
> Correct.  The hash needs to be converted to a matrix so the maximum
> memory usage is about double that of precise preallocation in advance.

Will  the memory be released in the hash after assembling the matrix?

> But this is only the first assembly, which is usually done before
> setting up preconditioners and Krylov spaces so in most cases would not
> significantly affect the maximum memory usage of the application.

If the nonzero structure changes over Newton iterations, and the maximum
memory usage of the application may be larger than that with the precise

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