[petsc-dev] Fwd: no petsc on Edison
Satish Balay
balay at mcs.anl.gov
Tue Jan 10 14:57:57 CST 2017
Are you on master? If so can you try with latest?
or use these patches.
https://bitbucket.org/petsc/petsc/commits/d742c75fd0d514f7fa1873d5b10984bc3f363031
https://bitbucket.org/petsc/petsc/commits/952da9c592908439a79849c624703c9c85ef4977
And see if you still encounter problems.
Satish
On Tue, 10 Jan 2017, Mark Adams wrote:
> We have a code that is failing on large scale runs on Edison at NERSC. We
> ran with a debug version and we got this error message that I assume is
> from a check that is done in debug. Is this a false positive? This is a 64
> bit integer build.
> Thanks,
> Mark
>
> [5]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> [5]PETSC ERROR: Argument out of range
> [5]PETSC ERROR: A really huge hash is being requested.. cannot process:
> 4294967296
> [5]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
> trouble shooting.
> [5]PETSC ERROR: Petsc Development GIT revision: v3.7.4-2584-g7175242 GIT
> Date: 2016-12-21 13:19:16 -0600
> [5]PETSC ERROR: /tmp/targetExec on a arch-xc30-dbg64-intel named nid00008
> by u6338 Sat Jan 7 16:39:16 2017
> [5]PETSC ERROR: Configure options --COPTFLAGS="-O0 -g -no-ipo"
> --CXXOPTFLAGS="-O0 -g -no-ipo" --FOPTFLAGS="-O0 -g -ipo"
> --download-parmetis --download-metis --download-hypre --with-ssl=0
> --with-cc=cc --with-clib-autodetect=0 --with-cxx=CC
> --with-cxxlib-autodetect=0 --with-debugging=1 --with-fc=ftn
> --with-fortranlib-autodetect=0 --with-shared-libraries=0 --with-x=0
> --with-mpiexec=srun LIBS=-lstdc++ --with-64-bit-indices
> --prefix=/global/homes/m/madams/petsc_install/petscv3.7-x[16527]PETSC
> ERROR: ----
>
> using:
> PETSC_DIR=/global/homes/m/madams/petsc_install/petscv3.7-xc30-dbg64-intel/
>
> maybe go back to opt version?
>
>
> On 12/22/2016 03:22 PM, Mark Adams wrote:
>
> > You configure with the size of an integer explicitly, ie,
> > --with-64-bit-integers. I can't imagine there is anything bigger, but it
> > would not be hard to do.
> >
> > On Thu, Dec 22, 2016 at 6:06 PM, David Trebotich <treb at hpcrdm.lbl.gov>
> > wrote:
> >
> > i just committed changes to SPMD that Brian needed for signed long long.
> >> Evidently petsc is now handling bigger matrices?
> >>
> >>
> >> On 12/22/2016 2:57 PM, Mark Adams wrote:
> >>
> >> There are a few hits on stack exchange, google:
> >>
> >> "error: expression must have class type"
> >>
> >> I think intputT is a templated type and it is templated with a PetscInt.
> >> You are calling the linearSize() method on a primitive type. That is my
> >> best guess.
> >>
> >> On Thu, Dec 22, 2016 at 3:33 PM, David Trebotich <treb at hpcrd.lbl.gov>
> >> wrote:
> >>
> >> building with dbg looks same:
> >>>
> >>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(23): error: expression must
> >>> have class type
> >>> return inputT.linearSize();
> >>> ^
> >>> detected during:
> >>> instantiation of "int linearSize(const T &) [with
> >>> T=PetscInt={PetscInt64={long long}}]" at line 128 of
> >>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H"
> >>> instantiation of "int MiniIVFAB<T>::size(const Box &, const
> >>> Interval &) const [with T=PetscInt={PetscInt64={long long}}]" at line 155
> >>> of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H"
> >>> instantiation of "int BaseEBCellFAB<T>::size(const Box &,
> >>> const Interval &) const [with T=PetscInt={PetscInt64={long long}}]" at
> >>> line
> >>> 149 of "../../../Chombo/lib/src/BoxTools/BoxLayoutData.H"
> >>> instantiation of "int LDOperator<T>::size(const T &, const
> >>> Box &, const Interval &) const [with T=BaseEBCellFAB<PetscInt={Pets
> >>> cInt64={long
> >>> long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>> implicit generation of "LDOperator<T>::LDOperator() [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of
> >>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>> instantiation of class "LDOperator<T> [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of
> >>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>> instantiation of "void LevelData<T>::copyTo(const Interval &,
> >>> BoxLayoutData<T> &, const Interval &, const Copier &, const LDOperator<T>
> >>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at
> >>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>> instantiation of "void LevelData<T>::copyTo(const Interval &,
> >>> BoxLayoutData<T> &, const Interval &) const [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32 of
> >>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>> instantiation of "LevelData<T>::LevelData() [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41 of
> >>> "../srcLib/EBPetscSolver.cpp"
> >>>
> >>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(35): error: expression must
> >>> have class type
> >>> inputT.linearOut(a_outBuf);
> >>> ^
> >>> detected during:
> >>> instantiation of "void linearOut(void *, const T &) [with
> >>> T=PetscInt={PetscInt64={long long}}]" at line 155 of
> >>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H"
> >>> instantiation of "void MiniIVFAB<T>::linearOut(void *, const
> >>> Box &, const Interval &) const [with T=PetscInt={PetscInt64={long
> >>> long}}]"
> >>> at line 169 of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H"
> >>> instantiation of "void BaseEBCellFAB<T>::linearOut(void *,
> >>> const Box &, const Interval &) const [with T=PetscInt={PetscInt64={long
> >>> long}}]" at line 154 of "../../../Chombo/lib/src/BoxTo
> >>> ols/BoxLayoutData.H"
> >>> instantiation of "void LDOperator<T>::linearOut(const T &,
> >>> void *, const Box &, const Interval &) const [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of
> >>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>> implicit generation of "LDOperator<T>::LDOperator() [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of
> >>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>> instantiation of class "LDOperator<T> [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of
> >>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>> instantiation of "void LevelData<T>::copyTo(const Interval &,
> >>> BoxLayoutData<T> &, const Interval &, const Copier &, const LDOperator<T>
> >>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at
> >>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>> instantiation of "void LevelData<T>::copyTo(const Interval &,
> >>> BoxLayoutData<T> &, const Interval &) const [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32 of
> >>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>> instantiation of "LevelData<T>::LevelData() [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41 of
> >>> "../srcLib/EBPetscSolver.cpp"
> >>>
> >>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(29): error: expression must
> >>> have class type
> >>> a_outputT.linearIn(inBuf);
> >>> ^
> >>> detected during:
> >>> instantiation of "void linearIn(T &, const void *) [with
> >>> T=PetscInt={PetscInt64={long long}}]" at line 181 of
> >>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H"
> >>> instantiation of "void MiniIVFAB<T>::linearIn(void *, const
> >>> Box &, const Interval &) [with T=PetscInt={PetscInt64={long long}}]" at
> >>> line 181 of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H"
> >>> instantiation of "void BaseEBCellFAB<T>::linearIn(void *,
> >>> const Box &, const Interval &) [with T=PetscInt={PetscInt64={long
> >>> long}}]"
> >>> at line 159 of "../../../Chombo/lib/src/BoxTools/BoxLayoutData.H"
> >>> instantiation of "void LDOperator<T>::linearIn(T &, void *,
> >>> const Box &, const Interval &) const [with T=BaseEBCellFAB<PetscInt={Pets
> >>> cInt64={long
> >>> long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>> implicit generation of "LDOperator<T>::LDOperator() [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of
> >>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>> instantiation of class "LDOperator<T> [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of
> >>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>> instantiation of "void LevelData<T>::copyTo(const Interval &,
> >>> BoxLayoutData<T> &, const Interval &, const Copier &, const LDOperator<T>
> >>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at
> >>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>> instantiation of "void LevelData<T>::copyTo(const Interval &,
> >>> BoxLayoutData<T> &, const Interval &) const [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32 of
> >>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>> instantiation of "LevelData<T>::LevelData() [with
> >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41 of
> >>> "../srcLib/EBPetscSolver.cpp"
> >>>
> >>> compilation aborted for ../srcLib/EBPetscSolver.cpp (code 2)
> >>> gmake[1]: *** [o/3d.Linux.64.CC.ftn.DEBUG.MPI.PETSC/EBPetscSolver.o]
> >>> Error 2
> >>>
> >>>
> >>> On 12/22/2016 09:42 AM, Mark Adams wrote:
> >>>
> >>> I have build a debug version (opt64 --> dbg64). You might try that.
> >>>>
> >>>> On Wed, Dec 21, 2016 at 9:46 PM, Mark Adams <mfadams at lbl.gov> wrote:
> >>>>
> >>>>
> >>>>
> >>>>> On Wed, Dec 21, 2016 at 2:25 PM, David Trebotich <treb at hpcrd.lbl.gov>
> >>>>> wrote:
> >>>>>
> >>>>> This wasn't happening until after you rebuilt petsc. So I am wondering
> >>>>>
> >>>>>> if you upgraded or changed something??
> >>>>>>
> >>>>>>
> >>>>>
> >>>>> Humm, let me rebuild. This is on Edison I assume.
> >>>>>
> >>>>> Try PETSC_DIR=/global/homes/m/madams/petsc_install/petscv3.7-xc3
> >>>>> 0-opt64-intel
> >>>>> (again)
> >>>>>
> >>>>> This is a new build. I would also do a deep clean on your end, of
> >>>>> course.
> >>>>>
> >>>>> I see a DCH_USE_COMPLEX ...
> >>>>>
> >>>>> Also, I would try a debug build just to get some data. This is some
> >>>>> strange problem of something is out of synch.
> >>>>>
> >>>>>
> >>>>>
> >>>>> On 12/19/2016 05:05 PM, Mark Adams wrote:
> >>>>>>
> >>>>>> On Mon, Dec 19, 2016 at 6:35 PM, David Trebotich <treb at hpcrd.lbl.gov>
> >>>>>>
> >>>>>>> wrote:
> >>>>>>>
> >>>>>>> I am sorry, you mean I need to add that to environment variables?
> >>>>>>>
> >>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>> The PETSC_ARCH is hardwired for the size of integers so you would use
> >>>>>>> PETSC_ARCH=arch-xc30-opt-intel to get 32 bit ints (I don't know of
> >>>>>>> this
> >>>>>>> installation ever being used). But now that I think about it you
> >>>>>>> always
> >>>>>>> use
> >>>>>>> 64 bit ints and you need to.
> >>>>>>>
> >>>>>>> So what is going on here ... it looks like an object has been
> >>>>>>> templated
> >>>>>>> on
> >>>>>>> a PetscInt and is getting mixed up. I don't think you ever use 32 bit
> >>>>>>> ints
> >>>>>>> in PETSc so it looks like you regressed here... I don't have a lot of
> >>>>>>> experience with templates. I'd ask Brian or Dan.
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>> On 12/19/2016 03:34 PM, Mark Adams wrote:
> >>>>>>>>
> >>>>>>>> There is a: arch-xc30-opt-intel
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>> On Mon, Dec 19, 2016 at 6:25 PM, David Trebotich <
> >>>>>>>>> treb at hpcrd.lbl.gov>
> >>>>>>>>> wrote:
> >>>>>>>>>
> >>>>>>>>> Hey Mark-
> >>>>>>>>>
> >>>>>>>>> We have had this issue recently and am wondering if you know what
> >>>>>>>>>
> >>>>>>>>>> the
> >>>>>>>>>> problem is. Maybe an int vs. PetscInt vs. PetscInt64 kind of
> >>>>>>>>>> thing?
> >>>>>>>>>>
> >>>>>>>>>> CC -O2 -fast -no-ipo -std=c++11 -O3 -m64
> >>>>>>>>>> -qopt-multi-version-aggressive
> >>>>>>>>>> -restrict -m64 -std=c++11 -Wno-unknown-pragmas -diag-disable 3180
> >>>>>>>>>> -DCH_SPACEDIM=3 -DCH_Linux -DNDEBUG -DCH_MPI
> >>>>>>>>>> -DMPICH_SKIP_MPICXX
> >>>>>>>>>> -ULAM_WANT_MPI2CPP -DMPI_NO_CPPBIND -DCH_USE_COMPLEX
> >>>>>>>>>> -DCH_USE_EB
> >>>>>>>>>> -DCH_USE_MEMORY_TRACKING -DCH_USE_64 -DCH_USE_DOUBLE
> >>>>>>>>>> -DCH_USE_HDF5
> >>>>>>>>>> -I/opt/cray/hdf5-parallel/1.8.16/INTEL/15.0/include -I.
> >>>>>>>>>> -I../srcBCG
> >>>>>>>>>> -I../srcLib -I../srcAdvectDiffuseCrunch_BCG
> >>>>>>>>>> -I../srcCrunchFlow_BCG
> >>>>>>>>>> -I../srcCrunchFlow_BCG/modules -DCH_USE_PETSC
> >>>>>>>>>> -I/global/homes/m/madams/petsc_install/petscv3.6-xc30-opt64-
> >>>>>>>>>> intel/include
> >>>>>>>>>> -I/global/homes/m/madams/petsc_install/petscv3.6-xc30-opt64-
> >>>>>>>>>> intel/include
> >>>>>>>>>> -I/global/homes/m/madams/petsc_install/petscv3.6-xc30-opt64-
> >>>>>>>>>> intel/include
> >>>>>>>>>> -DCH_FORT_UNDERSCORE -I../../../Chombo/lib/src/EBAMRTimeDependent
> >>>>>>>>>> -I../../../Chombo/lib/src/EBAMRElliptic
> >>>>>>>>>> -I../../../Chombo/lib/src/EBAM
> >>>>>>>>>> RTools
> >>>>>>>>>> -I../../../Chombo/lib/src/Workshop -I../../../Chombo/lib/src/EBTo
> >>>>>>>>>> ols
> >>>>>>>>>> -I../../../Chombo/lib/src/AMRTimeDependent
> >>>>>>>>>> -I../../../Chombo/lib/src/AMRElliptic
> >>>>>>>>>> -I../../../Chombo/lib/src/AMRTools -I../../../Chombo/lib/src/BoxT
> >>>>>>>>>> ools
> >>>>>>>>>> -I../../../Chombo/lib/src/BaseTools -DCH_LANG_CC -c
> >>>>>>>>>> ../srcLib/EBPetscSolver.cpp -o o/3d.Linux.64.CC.ftn.OPTHIGH.M
> >>>>>>>>>> PI.PETSC/EBPetscSolver.o
> >>>>>>>>>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(23): error: expression
> >>>>>>>>>> must
> >>>>>>>>>> have class type
> >>>>>>>>>> return inputT.linearSize();
> >>>>>>>>>> ^
> >>>>>>>>>> detected during:
> >>>>>>>>>> instantiation of "int linearSize(const T &) [with
> >>>>>>>>>> T=PetscInt={PetscInt64={long long}}]" at line 128 of
> >>>>>>>>>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H"
> >>>>>>>>>> instantiation of "int MiniIVFAB<T>::size(const Box &,
> >>>>>>>>>> const
> >>>>>>>>>> Interval &) const [with T=PetscInt={PetscInt64={long long}}]" at
> >>>>>>>>>> line
> >>>>>>>>>> 155
> >>>>>>>>>> of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H"
> >>>>>>>>>> instantiation of "int BaseEBCellFAB<T>::size(const Box
> >>>>>>>>>> &,
> >>>>>>>>>> const Interval &) const [with T=PetscInt={PetscInt64={long
> >>>>>>>>>> long}}]" at
> >>>>>>>>>> line
> >>>>>>>>>> 149 of "../../../Chombo/lib/src/BoxTools/BoxLayoutData.H"
> >>>>>>>>>> instantiation of "int LDOperator<T>::size(const T &,
> >>>>>>>>>> const
> >>>>>>>>>> Box
> >>>>>>>>>> &, const Interval &) const [with T=BaseEBCellFAB<PetscInt={Pets
> >>>>>>>>>> cInt64={long
> >>>>>>>>>> long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTo
> >>>>>>>>>> ols/LevelData.H"
> >>>>>>>>>> implicit generation of "LDOperator<T>::LDOperator()
> >>>>>>>>>> [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114
> >>>>>>>>>> of
> >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>>>>>>>>> instantiation of class "LDOperator<T> [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114
> >>>>>>>>>> of
> >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const
> >>>>>>>>>> Interval &,
> >>>>>>>>>> BoxLayoutData<T> &, const Interval &, const Copier &, const
> >>>>>>>>>> LDOperator<T>
> >>>>>>>>>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long
> >>>>>>>>>> long}}>]"
> >>>>>>>>>> at
> >>>>>>>>>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const
> >>>>>>>>>> Interval &,
> >>>>>>>>>> BoxLayoutData<T> &, const Interval &) const [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32
> >>>>>>>>>> of
> >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>>>>>>>>> instantiation of "LevelData<T>::LevelData() [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41
> >>>>>>>>>> of
> >>>>>>>>>> "../srcLib/EBPetscSolver.cpp"
> >>>>>>>>>>
> >>>>>>>>>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(35): error: expression
> >>>>>>>>>> must
> >>>>>>>>>> have class type
> >>>>>>>>>> inputT.linearOut(a_outBuf);
> >>>>>>>>>> ^
> >>>>>>>>>> detected during:
> >>>>>>>>>> instantiation of "void linearOut(void *, const T &)
> >>>>>>>>>> [with
> >>>>>>>>>> T=PetscInt={PetscInt64={long long}}]" at line 155 of
> >>>>>>>>>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H"
> >>>>>>>>>> instantiation of "void MiniIVFAB<T>::linearOut(void *,
> >>>>>>>>>> const
> >>>>>>>>>> Box &, const Interval &) const [with T=PetscInt={PetscInt64={long
> >>>>>>>>>> long}}]"
> >>>>>>>>>> at line 169 of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H"
> >>>>>>>>>> instantiation of "void BaseEBCellFAB<T>::linearOut(vo
> >>>>>>>>>> id
> >>>>>>>>>> *,
> >>>>>>>>>> const Box &, const Interval &) const [with
> >>>>>>>>>> T=PetscInt={PetscInt64={long
> >>>>>>>>>> long}}]" at line 154 of "../../../Chombo/lib/src/BoxTo
> >>>>>>>>>> ols/BoxLayoutData.H"
> >>>>>>>>>> instantiation of "void LDOperator<T>::linearOut(const
> >>>>>>>>>> T &,
> >>>>>>>>>> void *, const Box &, const Interval &) const [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114
> >>>>>>>>>> of
> >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>>>>>>>>> implicit generation of "LDOperator<T>::LDOperator()
> >>>>>>>>>> [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114
> >>>>>>>>>> of
> >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>>>>>>>>> instantiation of class "LDOperator<T> [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114
> >>>>>>>>>> of
> >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const
> >>>>>>>>>> Interval &,
> >>>>>>>>>> BoxLayoutData<T> &, const Interval &, const Copier &, const
> >>>>>>>>>> LDOperator<T>
> >>>>>>>>>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long
> >>>>>>>>>> long}}>]"
> >>>>>>>>>> at
> >>>>>>>>>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const
> >>>>>>>>>> Interval &,
> >>>>>>>>>> BoxLayoutData<T> &, const Interval &) const [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32
> >>>>>>>>>> of
> >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>>>>>>>>> instantiation of "LevelData<T>::LevelData() [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41
> >>>>>>>>>> of
> >>>>>>>>>> "../srcLib/EBPetscSolver.cpp"
> >>>>>>>>>>
> >>>>>>>>>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(29): error: expression
> >>>>>>>>>> must
> >>>>>>>>>> have class type
> >>>>>>>>>> a_outputT.linearIn(inBuf);
> >>>>>>>>>> ^
> >>>>>>>>>> detected during:
> >>>>>>>>>> instantiation of "void linearIn(T &, const void *)
> >>>>>>>>>> [with
> >>>>>>>>>> T=PetscInt={PetscInt64={long long}}]" at line 181 of
> >>>>>>>>>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H"
> >>>>>>>>>> instantiation of "void MiniIVFAB<T>::linearIn(void *,
> >>>>>>>>>> const
> >>>>>>>>>> Box &, const Interval &) [with T=PetscInt={PetscInt64={long
> >>>>>>>>>> long}}]"
> >>>>>>>>>> at
> >>>>>>>>>> line 181 of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H"
> >>>>>>>>>> instantiation of "void BaseEBCellFAB<T>::linearIn(voi
> >>>>>>>>>> d
> >>>>>>>>>> *,
> >>>>>>>>>> const Box &, const Interval &) [with T=PetscInt={PetscInt64={long
> >>>>>>>>>> long}}]"
> >>>>>>>>>> at line 159 of "../../../Chombo/lib/src/BoxTools/BoxLayoutData.H"
> >>>>>>>>>> instantiation of "void LDOperator<T>::linearIn(T &,
> >>>>>>>>>> void
> >>>>>>>>>> *,
> >>>>>>>>>> const Box &, const Interval &) const [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={Pets
> >>>>>>>>>> cInt64={long
> >>>>>>>>>> long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTo
> >>>>>>>>>> ols/LevelData.H"
> >>>>>>>>>> implicit generation of "LDOperator<T>::LDOperator()
> >>>>>>>>>> [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114
> >>>>>>>>>> of
> >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>>>>>>>>> instantiation of class "LDOperator<T> [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114
> >>>>>>>>>> of
> >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H"
> >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const
> >>>>>>>>>> Interval &,
> >>>>>>>>>> BoxLayoutData<T> &, const Interval &, const Copier &, const
> >>>>>>>>>> LDOperator<T>
> >>>>>>>>>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long
> >>>>>>>>>> long}}>]"
> >>>>>>>>>> at
> >>>>>>>>>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const
> >>>>>>>>>> Interval &,
> >>>>>>>>>> BoxLayoutData<T> &, const Interval &) const [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32
> >>>>>>>>>> of
> >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H"
> >>>>>>>>>> instantiation of "LevelData<T>::LevelData() [with
> >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41
> >>>>>>>>>> of
> >>>>>>>>>> "../srcLib/EBPetscSolver.cpp"
> >>>>>>>>>>
> >>>>>>>>>> compilation aborted for ../srcLib/EBPetscSolver.cpp (code 2)
> >>>>>>>>>> gmake[1]: *** [o/3d.Linux.64.CC.ftn.OPTHIGH.
> >>>>>>>>>> MPI.PETSC/EBPetscSolver.o]
> >>>>>>>>>> Error 2
> >>>>>>>>>> make: *** [all-example] Error 2
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>> On 12/19/2016 03:09 PM, Mark Adams wrote:
> >>>>>>>>>>
> >>>>>>>>>> Sorry cleaning up. insert "petsc_install" in the path: "...madams/
> >>>>>>>>>>
> >>>>>>>>>> petsc_install/petscv3.6..."
> >>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>>>>> On Mon, Dec 19, 2016 at 5:43 PM, David Trebotich <
> >>>>>>>>>>> treb at hpcrd.lbl.gov
> >>>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>>>>>> wrote:
> >>>>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>>>>> Hey Mark-
> >>>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>>>>> I seem to have lost contact with petsc over the weekend:
> >>>>>>>>>>>
> >>>>>>>>>>>> /global/homes/m/madams/petscv3.6-xc30-opt64-intel//lib/
> >>>>>>>>>>>> petsc/conf/variables:
> >>>>>>>>>>>> No such file or directory
> >>>>>>>>>>>> Last chance .ex rule for target /global/homes/m/madams/petscv3
> >>>>>>>>>>>> .6-xc30-opt64-intel//lib/petsc/conf/variables
> >>>>>>>>>>>>
> >>>>>>>>>>>> setenv | grep petsc:
> >>>>>>>>>>>> PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/petsc/3.
> >>>>>>>>>>>> 7.2.0/real/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_
> >>>>>>>>>>>> DEFAULT_TARGET@/lib/pkgconfig
> >>>>>>>>>>>> PETSC_DIR=/global/homes/m/madams/petscv3.6-xc30-opt64-intel/
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> Currently Loaded Modulefiles:
> >>>>>>>>>>>> 1) modules/3.2.10.4 8) intel/15.0.1.133
> >>>>>>>>>>>> 15) xpmem/0.1-2.0502.57015.1.15.ari 22)
> >>>>>>>>>>>> cray-mpich/7.4.1
> >>>>>>>>>>>> 2) nsg/1.2.0 9)
> >>>>>>>>>>>> cray-libsci/16.07.1
> >>>>>>>>>>>> 16) dvs/2.5_0.9.0-1.0502.1958.2.55.ari 23)
> >>>>>>>>>>>> slurm/edison
> >>>>>>>>>>>> 3) eswrap/1.3.3-1.020200.1278.0 10)
> >>>>>>>>>>>> udreg/2.3.2-1.0502.9889.2.20.ari 17)
> >>>>>>>>>>>> alps/5.2.3-2.0502.9295.14.14.a
> >>>>>>>>>>>> ri
> >>>>>>>>>>>> 24) altd/2.0
> >>>>>>>>>>>> 4) switch/1.0-1.0502.57058.1.58.ari 11)
> >>>>>>>>>>>> ugni/6.0-1.0502.10245.9.9.ari 18) rca/
> >>>>>>>>>>>> 1.0.0-2.0502.57212.2.56.ar
> >>>>>>>>>>>> i
> >>>>>>>>>>>> 25) darshan/2.3.1
> >>>>>>>>>>>> 5) craype-ivybridge 12) pmi/
> >>>>>>>>>>>> 5.0.10-1.0000.11050.0.0.ari 19) atp/2.0.2 26)
> >>>>>>>>>>>> emacs/24.2
> >>>>>>>>>>>> 6) craype-network-aries 13)
> >>>>>>>>>>>> dmapp/7.0.1-1.0502.10246.8.47.ari 20) PrgEnv-intel/5.2.56
> >>>>>>>>>>>> 27)
> >>>>>>>>>>>> cray-hdf5-parallel/1.8.16
> >>>>>>>>>>>> 7) craype/2.4.2 14)
> >>>>>>>>>>>> gni-headers/4.0-1.0502.10317.9.2.ari 21) cray-shmem/7.4.1
> >>>>>>>>>>>>
> >>>>>>>>>>>> Thanks.
> >>>>>>>>>>>>
> >>>>>>>>>>>> treb
> >>>>>>>>>>>>
> >>>>>>>>>>>> --
> >>>>>>>>>>>> David Trebotich
> >>>>>>>>>>>> Applied Numerical Algorithms Group
> >>>>>>>>>>>> Lawrence Berkeley National Laboratory
> >>>>>>>>>>>> (510) 486-5984 <%28510%29%20486-5984> office
> >>>>>>>>>>>> (510) 384-6868 <%28510%29%20384-6868> mobile
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> --
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>> David Trebotich
> >>>>>>>>>>>
> >>>>>>>>>> Applied Numerical Algorithms Group
> >>>>>>>>>> Lawrence Berkeley National Laboratory
> >>>>>>>>>> (510) 486-5984 <%28510%29%20486-5984> office
> >>>>>>>>>> (510) 384-6868 <%28510%29%20384-6868> mobile
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>> --
> >>>>>>>>>>
> >>>>>>>>>
> >>>>>>>>> David Trebotich
> >>>>>>>> Applied Numerical Algorithms Group
> >>>>>>>> Lawrence Berkeley National Laboratory
> >>>>>>>> (510) 486-5984 <%28510%29%20486-5984> office
> >>>>>>>> (510) 384-6868 <%28510%29%20384-6868> mobile
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> --
> >>>>>>>
> >>>>>> David Trebotich
> >>>>>> Applied Numerical Algorithms Group
> >>>>>> Lawrence Berkeley National Laboratory
> >>>>>> (510) 486-5984 <%28510%29%20486-5984> office
> >>>>>> (510) 384-6868 <%28510%29%20384-6868> mobile
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>
> >>>> --
> >>> David Trebotich
> >>> Applied Numerical Algorithms Group
> >>> Lawrence Berkeley National Laboratory
> >>> (510) 486-5984 office
> >>> (510) 384-6868 mobile
> >>>
> >>>
> >>>
> >> --
> >> David Trebotich
> >> Applied Numerical Algorithms Group
> >> Computational Research Division
> >> Lawrence Berkeley National Laboratory(510) 486-5984 office(510) 384-6868
> >> mobile
> >>
> >>
> >>
> >
>
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