[petsc-dev] download problem p4est on Cori at NERSC

[Mark Adams]

I think this will work because I have git when I configure on a login node
(Haswell). I build KNL by submitting a batch script (it takes to long to
fit in 30 minutes of an interactive session). That fails because git is not
available (can I just load the module ...) on a KNL compute node. It is
reconfiguring now, I'll let you know if it fails.
Thanks,

On Wed, Feb 15, 2017 at 4:59 PM, Satish Balay <balay at mcs.anl.gov> wrote:

> Sorry - this won't work - as p4est appears to require git [submodules?]..
>
> >>>>>>>>>>>> p4est.py <<<<<<<<<<<<<
>   def updateGitDir(self):
>     config.package.GNUPackage.updateGitDir(self)
>     Dir = self.getDir()
>     try:
>       libsc = self.libsc
>     except AttributeError:
>       try:
>         self.executeShellCommand([self.sourceControl.git, 'submodule',
> 'update', '--init'], cwd=Dir, log=self.log)
>         import os
>         if os.path.isfile(os.path.join(Dir,'sc','README')):
>           self.libsc = os.path.join(Dir,'sc')
>         else:
>           raise RuntimeError
>       except RuntimeError:
>         raise RuntimeError('Could not initialize sc submodule needed by
> p4est')
>     return
> <<<<<<
>
> Satish
>
> On Wed, 15 Feb 2017, Satish Balay wrote:
>
> > batch won't help here. its git vs tarball - and p4est curently doesn't
> have a taball.
> >
> > The following should give you a tarball - if you don't have git.
> >
> > diff --git a/config/BuildSystem/config/packages/p4est.py
> b/config/BuildSystem/config/packages/p4est.py
> > index 4735ff4..1f9507c 100644
> > --- a/config/BuildSystem/config/packages/p4est.py
> > +++ b/config/BuildSystem/config/packages/p4est.py
> > @@ -4,7 +4,7 @@ class Configure(config.package.GNUPackage):
> >    def __init__(self, framework):
> >      config.package.GNUPackage.__init__(self, framework)
> >      self.gitcommit         = 'v2.0'
> > -    self.download          = ['git://https://github.com/
> cburstedde/p4est']
> > +    self.download          = ['git://https://github.com/
> cburstedde/p4est','https://github.com/cburstedde/p4est/
> archive/'+self.gitcommit+'.tar.gz']
> >      self.functions         = ['p4est_init']
> >      self.includes          = ['p4est_bits.h']
> >      self.liblist           = [['libp4est.a', 'libsc.a']]
> >
> > I  can push this to master.
> >
> > Satish
> >
> > On Wed, 15 Feb 2017, Mark Adams wrote:
> >
> > > Oh, this is because git does not work on KNL. Maybe I should do
> > > with-batch=1,
> > >
> > >
> > > On Wed, Feb 15, 2017 at 4:36 PM, Mark Adams <mfadams at lbl.gov> wrote:
> > >
> > > > I get this error on the KNL partition at NERSC.  P4est works on the
> > > > Haswell partition and other downloads seem to work on the KNL
> partition.
> > > > Any ideas?
> > > >
> > >
> >
> >
>
>
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