[petsc-dev] install petsc on windows 10 with mpi

Mohammad S Dodaran mdodar1 at lsu.edu
Mon Feb 6 21:27:28 CST 2017 

I removed the INTEL-MPI from the environmental variables and I still have the same problem. When I configure it looks like it  accepts the mpi_include and mpi_lib but when I want to build , it says the configure was with mpi but in build it appears to  compile is using a non-mpich.

Mohammad

________________________________
From: Satish Balay <balay at mcs.anl.gov>
Sent: Monday, February 6, 2017 6:13:04 PM
To: Mohammad S Dodaran
Cc: petsc-dev
Subject: Re: [petsc-dev] install petsc on windows 10 with mpi

1. configure.log is a cygwin simlink - so native mail app is unable to
attach correctly.  The actual file is in
PETSC_DIR/PETSC_ARCH/lib/petsc/conf

2. Suggest doing the build without fftw and hdf5 packages [once the
basic build succeeds - you can look at adding these pacakges.]

3. remove INTEL-MPI from your env - before running configure.  [you
might be able to use intel-mpi instead of ms-mpi - but we don't have
any experience with it]

Satish

On Mon, 6 Feb 2017, Mohammad S Dodaran wrote:

> now I'm trying to configure petsc 3.7
> i used the format you showd in your previous email for the directories of fftw and hdf5 as below
>
> --with-fftw-dir=/cygdrive/c/cygwin64/home/fftw --with-hdf5-dir=/cygdrive/c/cygwin64/home/hdf5
>
> the result is the following
>
> TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:742)                  TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:742)                TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:742)      TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:742)                  TESTING: configureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:679)                           *******************************************************************************
>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
> -------------------------------------------------------------------------------
> --with-fftw-dir=/cygdrive/c/cygwin64/home/fftw did not work
> *******************************************************************************
>
> i also attached the configure.log
>
>
> ________________________________
> From: Satish Balay <balay at mcs.anl.gov>
> Sent: Monday, February 6, 2017 4:28:09 PM
> To: Mohammad S Dodaran
> Cc: Matthew Knepley; petsc-dev
> Subject: Re: [petsc-dev] install petsc on windows 10 with mpi
>
> >>>>
>
> Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --with-mpi-include="[/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include,/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include/x64]" --with-mpi-lib="[/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpi.lib,/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpifec.lib]" --with-fftw-dir="[/cygdrive/c/cygwin64/home/fftw]" --with-hdf5-dir="[/cygdrive/c/cygwin64/home/hdf5]" --download-fblaslapack=1 --with-c2html=0 --with-debugging=0 --with-ssl=0 --with-x=0 PETSC_ARCH= PETSC_DIR=/home/petsc-3.6.4
> <<<<
>
> > 'PETSC_ARCH='
>
> Can you rerun with a non-empty PETSC_ARCH string - or let configure choost default..
>
> > --with-fftw-dir="[/cygdrive/c/cygwin64/home/fftw]" --with-hdf5-dir="[/cygdrive/c/cygwin64/home/hdf5]"
>
> I don't think I've built these packages with MS compilers
> before. Somehow they are not picked up anyway. For one - the format
> here should be the following [but I don't know if that will make
> configure check for them]:
>
> --with-fftw-dir=/cygdrive/c/cygwin64/home/fftw --with-hdf5-dir=/cygdrive/c/cygwin64/home/hdf5
>
> > PETSC_DIR=/home/petsc-3.6.4
>
> Also - please use latest petsc-3.7 release.
>
> > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error :  "PETSc was configured with MPICH but
> > now appears to be compiling using a non-MPICH mpi.h"
>
> Hm - configure is picking up Intel-MPI from your 'INCLUDE' env
> variable - but not 'make' - not sure whats hapenning - but I think its
> best to start a clean build with petsc-3.7 [unless you need 3.6 for a
> specific need]
>
> Satish
>
> On Mon, 6 Feb 2017, Mohammad S Dodaran wrote:
>
> > hello
> >
> >
> > i configured petsc and i was trying to make then this error appeared
> >
> >
> > Using mpiexec: mpiexec
> > ==========================================
> > Building PETSc using GNU Make with 4 build threads
> > ==========================================
> > make[2]: Entering directory '/home/petsc-3.6.4'
> > /usr/bin/python ./config/gmakegen.py --petsc-arch=../petsc-3.6.4
> > Use "/usr/bin/make V=1" to see the verbose compile lines.
> >           CC ../petsc-3.6.4/obj/src/sys/info/verboseinfo.o
> >           CC ../petsc-3.6.4/obj/src/sys/info/ftn-auto/verboseinfof.o
> >           CC ../petsc-3.6.4/obj/src/sys/info/ftn-custom/zverboseinfof.o
> >           CC ../petsc-3.6.4/obj/src/sys/ftn-custom/zsys.o
> > verboseinfo.c
> > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error :  "PETSc was configured with MPICH but
> > now appears to be compiling using a non-MPICH mpi.h"
> > make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/verboseinfo.o] Error 2
> > make[2]: *** Waiting for unfinished jobs....
> > verboseinfof.c
> > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error :  "PETSc was configured with MPICH but
> > now appears to be compiling using a non-MPICH mpi.h"
> > make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/ftn-auto/verboseinfof.o] Error 2
> > zverboseinfof.c
> > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error :  "PETSc was configured with MPICH but
> > now appears to be compiling using a non-MPICH mpi.h"
> > make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/ftn-custom/zverboseinfof.o] Error 2
> > zsys.c
> > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error :  "PETSc was configured with MPICH but
> > now appears to be compiling using a non-MPICH mpi.h"
> > make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/ftn-custom/zsys.o] Error 2
> > make[2]: Leaving directory '/home/petsc-3.6.4'
> > make[1]: *** [/home/petsc-3.6.4/lib/petsc/conf/rules:107: gnumake] Error 2
> > make[1]: Leaving directory '/home/petsc-3.6.4'
> > **************************ERROR*************************************
> >   Error during compile, check ../petsc-3.6.4/lib/petsc/conf/make.log
> >   Send it and ../petsc-3.6.4/lib/petsc/conf/configure.log to petsc-maint at mcs.anl.gov
> > ********************************************************************
> > make: *** [makefile:30: all] Error 1
> >
> > i have also attached the configure.log and make.log
> >
> > regards
> > Mohammad
> >
> >
> >
> > ________________________________
> > From: Matthew Knepley <knepley at gmail.com>
> > Sent: Monday, February 6, 2017 8:07:41 AM
> > To: Mohammad S Dodaran
> > Cc: petsc-dev
> > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi
> >
> > On Sun, Feb 5, 2017 at 11:26 PM, Mohammad S Dodaran <mdodar1 at lsu.edu<mailto:mdodar1 at lsu.edu>> wrote:
> >
> > Satish,
> >
> > Thanks for your quick response. as you see I can ls to the directory:
> >
> >  ls /cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include/
> >
> > Yes, but as Satish said, there are spaces in the path above. We do not allow spaces in the path.
> > You cannot give a path to configure with spaces.
> >
> > You can remove the spaces using the cygpath command that Satish showed. Please use that command.
> > Remove the spaces from this path and give the spaceless path to configure.
> >
> >   Thanks,
> >
> >      Matt
> >
> > mpi.f90   mpi.h     mpif.h    mpio.h    mspms.h   pmidbg.h  x64/      x86/
> >
> >
> >
> > but I do not know why still it has the same problem. and my configure file looks strange.
> >
> > Best,
> >
> > Mohammad
> >
> > ________________________________
> > From: Satish Balay <balay at mcs.anl.gov<mailto:balay at mcs.anl.gov>>
> > Sent: Sunday, February 5, 2017 10:58:35 PM
> > To: Mohammad S Dodaran
> > Cc: petsc-dev at mcs.anl.gov<mailto:petsc-dev at mcs.anl.gov>
> > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi
> >
> > Try to figureout path without spaces.
> >
> > cygpath -u `cygpath -s -m PATH`
> >
> > Make sure you can do "ls" on this path.
> >
> > And use it with petsc configure.
> >
> > balay at ps4 ~
> > $ cygpath -u `cygpath -s -m /cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include`
> > /cygdrive/c/PROGRA~2/MICROS~2/MPI/Include
> >
> > balay at ps4 ~
> > $ ls /cygdrive/c/PROGRA~2/MICROS~2/MPI/Include
> > mpi.f90  mpi.h  mpif.h  mpio.h  mspms.h  pmidbg.h  x64  x86
> >
> > balay at ps4 ~
> > $
> >
> > For ex: - I use:
> >
> > >>>>>>>>
> > $ cat config/examples/arch-mswin-intel.py
> > #!/usr/bin/python
> > if __name__ == '__main__':
> >   import sys
> >   import os
> >   sys.path.insert(0, os.path.abspath('config'))
> >   import configure
> >   configure_options = [
> >     '--download-fblaslapack=1',
> >     '--with-cc=win32fe icl',
> >     '--with-cxx=win32fe icl',
> >     '--with-fc=win32fe ifort',
> >     '--with-mpi-include=[/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/,/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/x64]',
> >     '--with-mpi-lib=[/cygdrive/c/PROGRA~2/MICROS~2/MPI/lib/x64/msmpifec.lib,/cygdrive/c/PROGRA~2/MICROS~2/MPI/lib/x64/msmpi.lib]',
> >     '--with-mpiexec=/cygdrive/c/PROGRA~1/MICROS~2/Bin/mpiexec',
> >     '--with-shared-libraries=0',
> >     'DATAFILESPATH=c:/cygwin64/home/petsc/datafiles',
> >   ]
> >   configure.petsc_configure(configure_options)
> >
> > <<<<<<<<<<<
> >
> > if you still have issues - send us configure.log for the failure.
> >
> > Satish
> >
> > On Sun, 5 Feb 2017, Mohammad S Dodaran wrote:
> >
> > > Dear Petsc developers,
> > >
> > > I am trying to install Petsc on windows 10 but I have a problem. I installed  MS-MPI v8<http://go.microsoft.com/FWLink/p/?LinkID=389556> separately and in the configure options I use
> > >
> > > --with-mpi-include="/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include" --with-mpi-lib="/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Lib/x64/msmpi.lib"
> > >
> > >
> > > But it gives error which says:
> > >
> > > ***************************************************************
> > >                 ERROR in COMMAND LINE ARGUMENT to ./configure
> > > -------------------------------------------------------------------------------
> > > Invalid directory: [/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include for key with-mpi-include
> > >
> > >
> > > How should I solve it?
> > >
> > > Mohammad
> > >
> >
> >
> >
> >
> > --
> > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
> > -- Norbert Wiener
> >
>
>

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