[petsc-dev] install petsc on windows 10 with mpi

Mohammad S Dodaran mdodar1 at lsu.edu
Mon Feb 6 16:09:14 CST 2017 

hello


i configured petsc and i was trying to make then this error appeared


Using mpiexec: mpiexec
==========================================
Building PETSc using GNU Make with 4 build threads
==========================================
make[2]: Entering directory '/home/petsc-3.6.4'
/usr/bin/python ./config/gmakegen.py --petsc-arch=../petsc-3.6.4
Use "/usr/bin/make V=1" to see the verbose compile lines.
          CC ../petsc-3.6.4/obj/src/sys/info/verboseinfo.o
          CC ../petsc-3.6.4/obj/src/sys/info/ftn-auto/verboseinfof.o
          CC ../petsc-3.6.4/obj/src/sys/info/ftn-custom/zverboseinfof.o
          CC ../petsc-3.6.4/obj/src/sys/ftn-custom/zsys.o
verboseinfo.c
C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error :  "PETSc was configured with MPICH but
now appears to be compiling using a non-MPICH mpi.h"
make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/verboseinfo.o] Error 2
make[2]: *** Waiting for unfinished jobs....
verboseinfof.c
C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error :  "PETSc was configured with MPICH but
now appears to be compiling using a non-MPICH mpi.h"
make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/ftn-auto/verboseinfof.o] Error 2
zverboseinfof.c
C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error :  "PETSc was configured with MPICH but
now appears to be compiling using a non-MPICH mpi.h"
make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/ftn-custom/zverboseinfof.o] Error 2
zsys.c
C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error :  "PETSc was configured with MPICH but
now appears to be compiling using a non-MPICH mpi.h"
make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/ftn-custom/zsys.o] Error 2
make[2]: Leaving directory '/home/petsc-3.6.4'
make[1]: *** [/home/petsc-3.6.4/lib/petsc/conf/rules:107: gnumake] Error 2
make[1]: Leaving directory '/home/petsc-3.6.4'
**************************ERROR*************************************
  Error during compile, check ../petsc-3.6.4/lib/petsc/conf/make.log
  Send it and ../petsc-3.6.4/lib/petsc/conf/configure.log to petsc-maint at mcs.anl.gov
********************************************************************
make: *** [makefile:30: all] Error 1

i have also attached the configure.log and make.log

regards
Mohammad



________________________________
From: Matthew Knepley <knepley at gmail.com>
Sent: Monday, February 6, 2017 8:07:41 AM
To: Mohammad S Dodaran
Cc: petsc-dev
Subject: Re: [petsc-dev] install petsc on windows 10 with mpi

On Sun, Feb 5, 2017 at 11:26 PM, Mohammad S Dodaran <mdodar1 at lsu.edu<mailto:mdodar1 at lsu.edu>> wrote:

Satish,

Thanks for your quick response. as you see I can ls to the directory:

 ls /cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include/

Yes, but as Satish said, there are spaces in the path above. We do not allow spaces in the path.
You cannot give a path to configure with spaces.

You can remove the spaces using the cygpath command that Satish showed. Please use that command.
Remove the spaces from this path and give the spaceless path to configure.

  Thanks,

     Matt

mpi.f90   mpi.h     mpif.h    mpio.h    mspms.h   pmidbg.h  x64/      x86/



but I do not know why still it has the same problem. and my configure file looks strange.

Best,

Mohammad

________________________________
From: Satish Balay <balay at mcs.anl.gov<mailto:balay at mcs.anl.gov>>
Sent: Sunday, February 5, 2017 10:58:35 PM
To: Mohammad S Dodaran
Cc: petsc-dev at mcs.anl.gov<mailto:petsc-dev at mcs.anl.gov>
Subject: Re: [petsc-dev] install petsc on windows 10 with mpi

Try to figureout path without spaces.

cygpath -u `cygpath -s -m PATH`

Make sure you can do "ls" on this path.

And use it with petsc configure.

balay at ps4 ~
$ cygpath -u `cygpath -s -m /cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include`
/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include

balay at ps4 ~
$ ls /cygdrive/c/PROGRA~2/MICROS~2/MPI/Include
mpi.f90  mpi.h  mpif.h  mpio.h  mspms.h  pmidbg.h  x64  x86

balay at ps4 ~
$

For ex: - I use:

>>>>>>>>
$ cat config/examples/arch-mswin-intel.py
#!/usr/bin/python
if __name__ == '__main__':
  import sys
  import os
  sys.path.insert(0, os.path.abspath('config'))
  import configure
  configure_options = [
    '--download-fblaslapack=1',
    '--with-cc=win32fe icl',
    '--with-cxx=win32fe icl',
    '--with-fc=win32fe ifort',
    '--with-mpi-include=[/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/,/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/x64]',
    '--with-mpi-lib=[/cygdrive/c/PROGRA~2/MICROS~2/MPI/lib/x64/msmpifec.lib,/cygdrive/c/PROGRA~2/MICROS~2/MPI/lib/x64/msmpi.lib]',
    '--with-mpiexec=/cygdrive/c/PROGRA~1/MICROS~2/Bin/mpiexec',
    '--with-shared-libraries=0',
    'DATAFILESPATH=c:/cygwin64/home/petsc/datafiles',
  ]
  configure.petsc_configure(configure_options)

<<<<<<<<<<<

if you still have issues - send us configure.log for the failure.

Satish

On Sun, 5 Feb 2017, Mohammad S Dodaran wrote:

> Dear Petsc developers,
>
> I am trying to install Petsc on windows 10 but I have a problem. I installed  MS-MPI v8<http://go.microsoft.com/FWLink/p/?LinkID=389556> separately and in the configure options I use
>
> --with-mpi-include="/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include" --with-mpi-lib="/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Lib/x64/msmpi.lib"
>
>
> But it gives error which says:
>
> ***************************************************************
>                 ERROR in COMMAND LINE ARGUMENT to ./configure
> -------------------------------------------------------------------------------
> Invalid directory: [/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include for key with-mpi-include
>
>
> How should I solve it?
>
> Mohammad
>




--
What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
-- Norbert Wiener
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