[petsc-dev] Cannot reuse matrix of type (null)

[Eric Chamberland]

Hi Barry,

this is it!

I changed our call to MatConvert to use MAT_INPLACE_MATRIX and it now 
works where MAT_REUSE_MATRIX worked before...

I am testing all the 34 test cases that were bugging with this to see if 
it make all the tests working again!

Thanks again to both of you for the super-rapid answers!!! :)

Eric


On 16/12/16 08:50 AM, Barry Smith wrote:
>
>   Eric,
>
>     Perhaps you should be using MAT_INPLACE_MATRIX?
>
>     The documentation is not as clear as it should be on MAT_INPLACE_MATRIX vs MAT_REUSE_MATRIX and it is possible that some implementations of MatConvert_xxx() are broken and do not use this flag properly.
>
> MAT_INPLACE_MATRIX  means replace the input matrix with the matrix of the new type
>
> MAT_REUSE_MATRIX means reuse the matrix that has been passed in as the final value (that matrix must have come from a previous call to MatConvert() with the flag MAT_INITIAL_MATRIX)
>
>   Barry
>
>
>> On Dec 16, 2016, at 7:43 AM, Stefano Zampini <stefano.zampini at gmail.com> wrote:
>>
>> Actually, the matrix type has not yet been set (since you have "null" in your output)
>>
>> 2016-12-16 16:43 GMT+03:00 Stefano Zampini <stefano.zampini at gmail.com>:
>> Looking at lines 113-115 of master
>>
>>  if (reuse == MAT_REUSE_MATRIX) {
>>     ierr = PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense);CHKERRQ(ierr);
>>     if (!isseqdense) SETERRQ1(PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type);
>>   }
>>
>> you are trying to call MatConvert with the reuse flag on a matrix which is not of type SeqDense. Can you provide a MWE to reproduce the problem?
>>
>> Thanks,
>> Stefano
>>
>> 2016-12-16 16:39 GMT+03:00 Eric Chamberland <Eric.Chamberland at giref.ulaval.ca>:
>> Another precision: the problem may still be there since dec 15, not tonight...
>>
>> Eric
>>
>>
>>
>> On 16/12/16 08:30 AM, Eric Chamberland wrote:
>> Hi,
>>
>> something seems broken with master branch since last night.
>>
>> With our nighlty tests, we now have many times this PETSC ERROR:
>>
>> [0]PETSC ERROR: Cannot reuse matrix of type (null)
>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>> for trouble shooting.
>> [0]PETSC ERROR: Petsc Development GIT revision: v3.7.4-2508-ga46e98f GIT
>> Date: 2016-12-14 17:44:47 -0600
>> [0]PETSC ERROR:
>> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/BIB/bin/Test.BIBProblemeGD.dev
>> on a arch-linux2-c-debug named compile by Unknown Fri Dec 16 03:06:00 2016
>> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-master_debug
>> --with-mpi-compilers=1 --with-make-np=12 --with-shared-libraries=1
>> --with-mpi-dir=/opt/openmpi-1.10.2 --with-debugging=yes
>> --with-mkl_pardiso=1 --with-mkl_pardiso-dir=/opt/intel/composerxe/mkl
>> --download-ml=yes --download-mumps=yes --download-superlu=yes
>> --download-superlu_dist=yes --download-parmetis=yes
>> --download-ptscotch=yes --download-metis=yes --download-suitesparse=yes
>> --download-hypre=yes --with-scalapack=1
>> --with-scalapack-include=/opt/intel/composerxe/mkl/include
>> --with-scalapack-lib="-L/opt/intel/composerxe/mkl/lib/intel64
>> -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64"
>> --with-blas-lapack-dir=/opt/intel/composerxe/mkl/lib/intel64
>> [0]PETSC ERROR: #1 MatConvert_SeqAIJ_SeqDense() line 115 in
>> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/dense/seq/dense.c
>>
>> [0]PETSC ERROR: #2 MatConvert() line 4136 in
>> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c
>>
>>
>>
>> With all other PETSc versions we use, with the same tests, we do not
>> have this problem.
>>
>> Here are the configure/build logs:
>>
>> http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.12.16.02h00m01s_configure.log
>>
>> http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.12.16.02h00m01s_make.log
>>
>> http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.12.16.02h00m01s_RDict.log
>>
>> http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.12.16.02h00m01s_CMakeLists.txt
>>
>>
>> Is it a normal change or is it a bug?
>>
>> I can provide more context to help dig into this.
>>
>> Thanks,
>>
>> Eric
>>
>>
>>
>> --
>> Stefano
>>
>>
>>
>> --
>> Stefano