[petsc-dev] Configure problem on Titan

[Satish Balay]

>>>
Executing: cc  -o /tmp/scratch/petsc-sY83lc/config.setCompilers/conftest    /tmp/scratch/petsc-sY83lc/config.setCompilers/conftest.o
Executing: /tmp/scratch/petsc-sY83lc/config.setCompilers/conftest
ERROR while running executable: Could not execute "/tmp/scratch/petsc-sY83lc/config.setCompilers/conftest":
/tmp/scratch/petsc-sY83lc/config.setCompilers/conftest: error while loading shared libraries: libacml.so: cannot open shared object file: No such file or directory
<<<

Presumably ACML module is not setup correctly - as its not adding the location to LD_LIBRARY_PATH
[or shoud it be CRAY_LD_LIBRARY_PATH?]

Satish

On Wed, 11 Mar 2015, Mark Adams wrote:

> I am now trying to build on Titan with GNU and get this.  I tried with and
> without 'LIBS=-lstdc++'.
> 
> On Wed, Mar 11, 2015 at 3:50 PM, Mark Adams <mfadams at lbl.gov> wrote:
> 
> >
> >
> > On Wed, Mar 11, 2015 at 3:10 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> >
> >> A more suitable way to specify -lstdc++ would be via option LIBS
> >> [this way  its used by clinker,cxxlinker,flinker - as required]
> >>
> >> LIBS="-lstdc++"
> >>
> >
> > Ah, right.  I have that on Edison.  Now it seems to be required on Titan.
> >
> > Thanks,
> >
> >
> >>
> >> Satish
> >>
> >> On Wed, 11 Mar 2015, Eric Bavier wrote:
> >>
> >> > It looks like you are building with the PGI compilers.  Try adding:
> >> >
> >> > --CXX_LINKER_FLAGS="-Meh_frame -lstdc++"
> >> >
> >> > to your petsc configure flags.
> >> >
> >> > Hope that helps,
> >> > `~Eric Bavier, Scientific Libraries, Cray Inc.
> >> > ________________________________________
> >> > From: petsc-dev-bounces at mcs.anl.gov [petsc-dev-bounces at mcs.anl.gov] on
> >> behalf of Satish Balay [balay at mcs.anl.gov]
> >> > Sent: Wednesday, March 11, 2015 16:55
> >> > To: Mark Adams
> >> > Cc: For users of the development version of PETSc
> >> > Subject: Re: [petsc-dev] Configure problem on Titan
> >> >
> >> > >>>>>>>>>
> >> > Executing: ftn  -o /tmp/scratch/petsc-5_JlCR/config.compilers/conftest
> >>   -mp -fast  /tmp/scratch/petsc-5_JlCR/config.compilers/conftest.o
> >> /tmp/scratch/petsc-5_JlCR/config.compilers/cxxobj.o
> >> /tmp/scratch/petsc-5_JlCR/config.compilers/confc.o  -ldl
> >> > Possible ERROR while running linker: exit code 512
> >> > stderr:
> >> > /tmp/scratch/petsc-5_JlCR/config.compilers/cxxobj.o:(.eh_frame+0x12):
> >> undefined reference to `__gxx_personality_v0'
> >> > /tmp/scratch/petsc-5_JlCR/config.compilers/confc.o:(.eh_frame+0x12):
> >> undefined reference to `__gxx_personality_v0'
> >> > /usr/bin/ld: link errors found, deleting executable
> >> `/tmp/scratch/petsc-5_JlCR/config.compilers/conftest'
> >> > <<<<<<
> >> >
> >> > Perhaps the compilers are not setup correctly after the update?
> >> >
> >> > If you don't need c++ - you can try building with --with-cxx=0
> >> configure option..
> >> >
> >> > satish
> >> >
> >> > On Wed, 11 Mar 2015, Mark Adams wrote:
> >> >
> >> > > I am getting this error on Titan.  They just had a big PM and it was
> >> > > recommended that we rebuild everything
> >> > >
> >> >
> >> >
> >>
> >>
> >
>