[petsc-dev] [petsc-maint] Errors when testing PETSc build on Windows
Satish Balay
balay at mcs.anl.gov
Thu Jun 18 17:27:38 CDT 2015
I'm not sure why you get this error. Perhaps others might have better suggestions.
You can try using the tarball that has fortran stubs already generated
[ so that you can skip sowing/bfort]
http://ftp.mcs.anl.gov/pub/petsc/petsc-master.tar.gz
BTW: did you use winzip or equivalent to extract petsc sources? [I'm
presuming that you've downloaded the sources from
https://bitbucket.org/petsc/petsc/get/master.tar.gz]. Its best to use
'tar -xvf petsc.tar.gz' to untar petsc sources.
Satish
On Thu, 18 Jun 2015, Hector E Barrios Molano wrote:
> Satish,
>
> This is the output:
>
> $ ls /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf/bfort-base.txt
> /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf/bfort-base.txt
>
>
> Here is what the file contains:
>
> # Basic types in C and their Fortran equivalents
> native int integer
> native char character
> native double double precision
> native float real
> native short integer*2
> native long
> native size_t
> native complex complex
> native dcomplex double precision complex
> # The default bfort definitions includes petsc.
> # For this version, to exclude the petsc definitions,
> # comment out this include
> include bfort-petsc.txt
>
>
> Hector
>
>
> On Thu, Jun 18, 2015 at 5:18 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> > What do you have for:
> >
> > ls /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf/bfort-base.txt
> >
> > Satish
> >
> > On Thu, 18 Jun 2015, Hector E Barrios Molano wrote:
> >
> >> Hi Satish,
> >>
> >> attached is configure.log compressed
> >>
> >> On Thu, Jun 18, 2015 at 2:46 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> >> > Can you send configure.log?
> >> >
> >> >
> >> > Satish
> >> >
> >> > On Thu, 18 Jun 2015, Hector E Barrios Molano wrote:
> >> >
> >> >> Hi Satish and Matt,
> >> >>
> >> >> I just cloned it again and I'm still having the same problem:
> >> >>
> >> >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort'
> >> >> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel
> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]
> >> >> --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]
> >> >> --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]
> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib]
> >> >> ===============================================================================
> >> >> Configuring PETSc to compile on your system
> >> >> ===============================================================================
> >> >> ===============================================================================
> >> >>
> >> >>
> >> >> *****WARNING:
> >> >> PETSC_DIR appears to be a Git clone - but git is not found in
> >> >> PATH********
> >> >>
> >> >>
> >> >> ===============================================================================
> >> >>
> >> >> ===============================================================================
> >> >> Trying to
> >> >> download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz
> >> >> for SOWING
> >> >> ===============================================================================
> >> >>
> >> >> ===============================================================================
> >> >> Running
> >> >> configure on SOWING; this may take several minutes
> >> >>
> >> >> ===============================================================================
> >> >>
> >> >> ===============================================================================
> >> >> Running
> >> >> make on SOWING; this may take several minutes
> >> >>
> >> >> ===============================================================================
> >> >>
> >> >> ===============================================================================
> >> >> Running
> >> >> make install on SOWING; this may take several minutes
> >> >>
> >> >> ===============================================================================
> >> >> TESTING:
> >> >> checkSharedLibrary from
> >> >> config.packages.sowing(config/BuildSystem/config/package.py:625)
> >> >>
> >> >> *******************************************************************************
> >> >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
> >> >> for details):
> >> >> -------------------------------------------------------------------------------
> >> >> *******Error generating Fortran stubs: Error running bfort
> >> >> cd /cygdrive/c/Installed/petsc-dev/petsc/include;
> >> >> BFORT_CONFIG_PATH=/cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf
> >> >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/bin/bfort -dir
> >> >> /cygdrive/c/Installed/petsc-dev/petsc/include/ftn-auto -mnative -ansi
> >> >> -nomsgs -noprofile -anyname -mapptr -mpi -mpi2 -ferr -ptrprefix Petsc
> >> >> -ptr64 PETSC_USE_POINTER_CONVERSION -fcaps PETSC_HAVE_FORTRAN_CAPS
> >> >> -fuscore PETSC_HAVE_FORTRAN_UNDERSCORE -f90mod_skip_header -f90modfile
> >> >> f90module.f90 petsc.h petscao.h petscbag.h petscblaslapack.h
> >> >> petscblaslapack_c.h petscblaslapack_caps.h petscblaslapack_stdcall.h
> >> >> petscblaslapack_uscore.h petscbt.h petsccharacteristic.h petscctable.h
> >> >> petsccusp.h petscdm.h petscdmcomposite.h petscdmda.h petscdmdatypes.h
> >> >> petscdmmoab.h petscdmnetwork.h petscdmpatch.h petscdmplex.h
> >> >> petscdmredundant.h petscdmshell.h petscdmsliced.h petscdmtypes.h
> >> >> petscdraw.h petscdrawtypes.h petscds.h petscdstypes.h petscdt.h
> >> >> petscerror.h petscfe.h petscfetypes.h petscfv.h petscfvtypes.h
> >> >> petscis.h petscistypes.h petscksp.h petsclog.h petscmat.h
> >> >> petscmatelemental.h petscmath.h petscmatlab.h petscoptions.h petscpc.h
> >> >> petscpctypes.h petscpf.h petscsf.h petscsftypes.h petscsnes.h
> >> >> petscsys.h petsctao.h petsctaolinesearch.h petsctime.h petscts.h
> >> >> petscvalgrind.h petscvec.h petscversion.h petscviennacl.h
> >> >> petscviewer.h petscviewerhdf5.h petscviewersaws.h petscviewertypes.h
> >> >> petscwebclient.h
> >> >> Testing path as file /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf
> >> >> Testing file /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf/bfort-base.txt
> >> >> Testing file /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt
> >> >> Testing path as file /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share
> >> >> Testing file /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share/bfort-base.txt
> >> >> Testing file /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt
> >> >> Unable to find bfort-base.txt config file in
> >> >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share*******
> >> >> *******************************************************************************
> >> >>
> >> >>
> >> >> Hector
> >> >>
> >> >> On Thu, Jun 18, 2015 at 1:46 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> >> >> > On Thu, 18 Jun 2015, Matthew Knepley wrote:
> >> >> >
> >> >> >> On Thu, Jun 18, 2015 at 12:09 PM, Hector E Barrios Molano <
> >> >> >> hectorb at utexas.edu> wrote:
> >> >> >>
> >> >> >> > yes I cloned it from git.
> >> >> >> >
> >> >> >>
> >> >> >> There appears to be a problem with your clone. Can you clone it again?
> >> >> >
> >> >> > The following is equivalent to a fresh clone [without needing the extra
> >> >> > network traffic]
> >> >> >
> >> >> > rm -rf arch*
> >> >> > git clean -f -d -x
> >> >> >
> >> >> > Satish
> >> >> >
> >> >> >
> >> >> >>
> >> >> >> Thanks,
> >> >> >>
> >> >> >> Matt
> >> >> >>
> >> >> >>
> >> >> >> > On Thu, Jun 18, 2015 at 12:06 PM, Matthew Knepley <knepley at gmail.com>
> >> >> >> > wrote:
> >> >> >> > > On Thu, Jun 18, 2015 at 11:57 AM, Hector E Barrios Molano
> >> >> >> > > <hectorb at utexas.edu> wrote:
> >> >> >> > >>
> >> >> >> > >> Hi Satish,
> >> >> >> > >>
> >> >> >> > >> Now I'm getting this error. Why its trying to use "bfort"?
> >> >> >> > >
> >> >> >> > >
> >> >> >> > > When using a clone, it tries to run 'bfort'. Are you trying to use a
> >> >> >> > clone?
> >> >> >> > >
> >> >> >> > > Thanks,
> >> >> >> > >
> >> >> >> > > Matt
> >> >> >> > >
> >> >> >> > >>
> >> >> >> > >> Thank you,
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort'
> >> >> >> > >> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel
> >> >> >> > >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> >> > >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]
> >> >> >> > >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib]
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > ===============================================================================
> >> >> >> > >> Configuring PETSc to compile on your system
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > ===============================================================================
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > ===============================================================================
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >> *****WARNING:
> >> >> >> > >> PETSC_DIR appears to be a Git clone - but git is not found in
> >> >> >> > >> PATH********
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > ===============================================================================
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > ===============================================================================
> >> >> >> > >> Running
> >> >> >> > >> configure on SOWING; this may take several minutes
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > ===============================================================================
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > ===============================================================================
> >> >> >> > >> Running
> >> >> >> > >> make on SOWING; this may take several minutes
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > ===============================================================================
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > ===============================================================================
> >> >> >> > >> Running
> >> >> >> > >> make install on SOWING; this may take several minutes
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > ===============================================================================
> >> >> >> > >> TESTING:
> >> >> >> > >> checkSharedLibrary from
> >> >> >> > >> config.packages.sowing(config/BuildSystem/config/package.py:625)
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > *******************************************************************************
> >> >> >> > >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
> >> >> >> > >> for details):
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > -------------------------------------------------------------------------------
> >> >> >> > >> *******Error generating Fortran stubs: Error running bfort
> >> >> >> > >> cd /cygdrive/c/Installed/petsc-dev/petsc/include;
> >> >> >> > >> BFORT_CONFIG_PATH=/cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf
> >> >> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/bin/bfort -dir
> >> >> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/include/ftn-auto -mnative -ansi
> >> >> >> > >> -nomsgs -noprofile -anyname -mapptr -mpi -mpi2 -ferr -ptrprefix Petsc
> >> >> >> > >> -ptr64 PETSC_USE_POINTER_CONVERSION -fcaps PETSC_HAVE_FORTRAN_CAPS
> >> >> >> > >> -fuscore PETSC_HAVE_FORTRAN_UNDERSCORE -f90mod_skip_header -f90modfile
> >> >> >> > >> f90module.f90 petsc.h petscao.h petscbag.h petscblaslapack.h
> >> >> >> > >> petscblaslapack_c.h petscblaslapack_caps.h petscblaslapack_stdcall.h
> >> >> >> > >> petscblaslapack_uscore.h petscbt.h petsccharacteristic.h petscctable.h
> >> >> >> > >> petsccusp.h petscdm.h petscdmcomposite.h petscdmda.h petscdmdatypes.h
> >> >> >> > >> petscdmmoab.h petscdmnetwork.h petscdmpatch.h petscdmplex.h
> >> >> >> > >> petscdmredundant.h petscdmshell.h petscdmsliced.h petscdmtypes.h
> >> >> >> > >> petscdraw.h petscdrawtypes.h petscds.h petscdstypes.h petscdt.h
> >> >> >> > >> petscerror.h petscfe.h petscfetypes.h petscfv.h petscfvtypes.h
> >> >> >> > >> petscis.h petscistypes.h petscksp.h petsclog.h petscmat.h
> >> >> >> > >> petscmatelemental.h petscmath.h petscmatlab.h petscoptions.h petscpc.h
> >> >> >> > >> petscpctypes.h petscpf.h petscsf.h petscsftypes.h petscsnes.h
> >> >> >> > >> petscsys.h petsctao.h petsctaolinesearch.h petsctime.h petscts.h
> >> >> >> > >> petscvalgrind.h petscvec.h petscversion.h petscviennacl.h
> >> >> >> > >> petscviewer.h petscviewerhdf5.h petscviewersaws.h petscviewertypes.h
> >> >> >> > >> petscwebclient.h
> >> >> >> > >> Testing path as file
> >> >> >> > /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf
> >> >> >> > >> Testing file
> >> >> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf/bfort-base.txt
> >> >> >> > >> Testing file
> >> >> >> > /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt
> >> >> >> > >> Testing path as file
> >> >> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share
> >> >> >> > >> Testing file
> >> >> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share/bfort-base.txt
> >> >> >> > >> Testing file
> >> >> >> > /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt
> >> >> >> > >> Unable to find bfort-base.txt config file in
> >> >> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share*******
> >> >> >> > >>
> >> >> >> > >>
> >> >> >> > *******************************************************************************
> >> >> >> > >>
> >> >> >> > >> Hector
> >> >> >> > >>
> >> >> >> > >> On Wed, Jun 17, 2015 at 5:16 PM, Satish Balay <balay at mcs.anl.gov>
> >> >> >> > wrote:
> >> >> >> > >> > Hm - perhaps you have a different 'find' command in your path. What do
> >> >> >> > >> > you have for:
> >> >> >> > >> >
> >> >> >> > >> > which find
> >> >> >> > >> >
> >> >> >> > >> > Try:
> >> >> >> > >> >
> >> >> >> > >> > export PATH=/usr/bin:${PATH}
> >> >> >> > >> >
> >> >> >> > >> > and rerun configure
> >> >> >> > >> >
> >> >> >> > >> > We should look at replacing all shell code with python equivalent..
> >> >> >> > >> >
> >> >> >> > >> > Satish
> >> >> >> > >> >
> >> >> >> > >> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote:
> >> >> >> > >> >
> >> >> >> > >> >> Hi Satish,
> >> >> >> > >> >>
> >> >> >> > >> >> Taking out --with-sowing=0 gives me:
> >> >> >> > >> >>
> >> >> >> > >> >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort'
> >> >> >> > >> >> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel
> >> >> >> > >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> >> > >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]
> >> >> >> > >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib]
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > ===============================================================================
> >> >> >> > >> >> Configuring PETSc to compile on your system
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > ===============================================================================
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > ===============================================================================
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > >> >> *****WARNING:
> >> >> >> > >> >> PETSC_DIR appears to be a Git clone - but git is not found in
> >> >> >> > >> >> PATH********
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > ===============================================================================
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > ===============================================================================
> >> >> >> > >> >> Trying to
> >> >> >> > >> >> download
> >> >> >> > >> >>
> >> >> >> > http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz
> >> >> >> > >> >> for SOWING
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > ===============================================================================
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > ===============================================================================
> >> >> >> > >> >> Trying to
> >> >> >> > >> >> download
> >> >> >> > >> >>
> >> >> >> > ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz
> >> >> >> > >> >> for SOWING
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > ===============================================================================
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > *******************************************************************************
> >> >> >> > >> >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
> >> >> >> > >> >> for details):
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > -------------------------------------------------------------------------------
> >> >> >> > >> >> Error changing permissions for sowing-1.1.17-p1 obtained from
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages/_d_sowing-1.1.17-p1.tar.gz
> >> >> >> > >> >> : Could not execute "cd
> >> >> >> > >> >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages;
> >> >> >> > >> >> chmod -R a+r sowing-1.1.17-p1;find sowing-1.1.17-p1 -type d -name
> >> >> >> > "*"
> >> >> >> > >> >> -exec chmod a+rx {} \;":
> >> >> >> > >> >> FIND: Parameter format not correct
> >> >> >> > >> >> Error changing permissions for sowing-1.1.17-p1 obtained from
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages/_d_sowing-1.1.17-p1.tar.gz
> >> >> >> > >> >> : Could not execute "cd
> >> >> >> > >> >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages;
> >> >> >> > >> >> chmod -R a+r sowing-1.1.17-p1;find sowing-1.1.17-p1 -type d -name
> >> >> >> > "*"
> >> >> >> > >> >> -exec chmod a+rx {} \;":
> >> >> >> > >> >> FIND: Parameter format not correct
> >> >> >> > >> >>
> >> >> >> > >> >>
> >> >> >> > *******************************************************************************
> >> >> >> > >> >>
> >> >> >> > >> >> On Wed, Jun 17, 2015 at 3:36 PM, Satish Balay <balay at mcs.anl.gov>
> >> >> >> > >> >> wrote:
> >> >> >> > >> >> >> --with-sowing=0
> >> >> >> > >> >> >
> >> >> >> > >> >> > 1. make sure you have cygwin gcc/g++ installed.
> >> >> >> > >> >> > 2. configure PETSc without the above option [and rebuild the
> >> >> >> > >> >> > libraries]
> >> >> >> > >> >> >
> >> >> >> > >> >> > Satish
> >> >> >> > >> >> >
> >> >> >> > >> >> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote:
> >> >> >> > >> >> >
> >> >> >> > >> >> >> Hi Satish,
> >> >> >> > >> >> >>
> >> >> >> > >> >> >> Thank you! It solved some errors. However, I'm still having
> >> >> >> > problems
> >> >> >> > >> >> >> with the Fortran test.
> >> >> >> > >> >> >>
> >> >> >> > >> >> >> $ make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
> >> >> >> > >> >> >> PETSC_ARCH=windows-intel test
> >> >> >> > >> >> >> Running test examples to verify correct installation
> >> >> >> > >> >> >> Using PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc and
> >> >> >> > >> >> >> PETSC_ARCH=windows-intel
> >> >> >> > >> >> >> C/C++ example src/snes/examples/tutorials/ex19 run successfully
> >> >> >> > with
> >> >> >> > >> >> >> 1
> >> >> >> > >> >> >> MPI process
> >> >> >> > >> >> >> C/C++ example src/snes/examples/tutorials/ex19 run successfully
> >> >> >> > with
> >> >> >> > >> >> >> 2
> >> >> >> > >> >> >> MPI processes
> >> >> >> > >> >> >> *******************Error detected during compile or
> >> >> >> > >> >> >> link!*******************
> >> >> >> > >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> >> >> > >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/src/snes/examples/tutorials
> >> >> >> > >> >> >> ex5f
> >> >> >> > >> >> >> *********************************************************
> >> >> >> > >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort -c
> >> >> >> > >> >> >> -MT -Z7 -fpp -I/cygdrive/c/Installed/petsc-dev/petsc/include
> >> >> >> > >> >> >> -I/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/include
> >> >> >> > >> >> >> -I/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> >> -I/cygdrive/c/Installed/msmpi/Include
> >> >> >> > >> >> >> -I/cygdrive/c/Installed/msmpi/Include/x64 -o ex5f.o ex5f.F
> >> >> >> > >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort
> >> >> >> > -MT
> >> >> >> > >> >> >> -Z7 -fpp -o ex5f ex5f.o
> >> >> >> > >> >> >> -L/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/lib -lpetsc
> >> >> >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib
> >> >> >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib
> >> >> >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib
> >> >> >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib
> >> >> >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib
> >> >> >> > >> >> >> /cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> >> > >> >> >> /cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> >> > >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib
> >> >> >> > >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib Gdi32.lib
> >> >> >> > >> >> >> User32.lib
> >> >> >> > >> >> >> Advapi32.lib Kernel32.lib Ws2_32.lib
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESCREATE
> >> >> >> > >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> DMCREATEGLOBALVECTOR referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol VECDUPLICATE
> >> >> >> > >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > DMDAGETCORNERS
> >> >> >> > >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> DMDAGETGHOSTCORNERS referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESSETDM
> >> >> >> > >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> SNESSETFROMOPTIONS referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> SNESGETITERATIONNUMBER referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol VECDESTROY
> >> >> >> > >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESDESTROY
> >> >> >> > >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol DMDESTROY
> >> >> >> > >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> MATSETVALUESLOCAL
> >> >> >> > >> >> >> referenced in function FORMJACOBIANLOCAL
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> MATASSEMBLYBEGIN
> >> >> >> > >> >> >> referenced in function FORMJACOBIANLOCAL
> >> >> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > MATASSEMBLYEND
> >> >> >> > >> >> >> referenced in function FORMJACOBIANLOCAL
> >> >> >> > >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex5f.exe :
> >> >> >> > >> >> >> fatal
> >> >> >> > >> >> >> error LNK1120: 14 unresolved externals
> >> >> >> > >> >> >> makefile:50: recipe for target 'ex5f' failed
> >> >> >> > >> >> >> make[3]: [ex5f] Error 96 (ignored)
> >> >> >> > >> >> >> /usr/bin/rm -f ex5f.o
> >> >> >> > >> >> >> Completed test examples
> >> >> >> > >> >> >> =========================================
> >> >> >> > >> >> >> Now to evaluate the computer systems you plan use - do:
> >> >> >> > >> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
> >> >> >> > >> >> >> PETSC_ARCH=windows-intel streams NPMAX=<number of MPI processes
> >> >> >> > you
> >> >> >> > >> >> >> intend to use>
> >> >> >> > >> >> >>
> >> >> >> > >> >> >> On Wed, Jun 17, 2015 at 3:01 PM, Satish Balay <balay at mcs.anl.gov>
> >> >> >> > >> >> >> wrote:
> >> >> >> > >> >> >> > /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib
> >> >> >> > >> >> >> >
> >> >> >> > >> >> >> > This is the wrong version of MKL. You should look for lp64
> >> >> >> > variant
> >> >> >> > >> >> >> > [not ilp64]
> >> >> >> > >> >> >> >
> >> >> >> > >> >> >> > [you can just edit
> >> >> >> > >> >> >> > PETSC_DIR/PETSC_ARCH/lib/petsc/conf/petscvariables and make this
> >> >> >> > >> >> >> > change manually - and retry compiling the example]
> >> >> >> > >> >> >> >
> >> >> >> > >> >> >> > Satish
> >> >> >> > >> >> >> >
> >> >> >> > >> >> >> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote:
> >> >> >> > >> >> >> >
> >> >> >> > >> >> >> >> Hi PETSc Experts!
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> I'm trying to build PETSc on a Windows machine, I got errors
> >> >> >> > >> >> >> >> during
> >> >> >> > >> >> >> >> the test part. I downloaded petsc-dev from git.
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> This are my configuration command:
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort'
> >> >> >> > >> >> >> >> --prefix=/cygdrive/c/Installed/petsc/
> >> >> >> > --PETSC_ARCH=windows-intel
> >> >> >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]
> >> >> >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]
> >> >> >> > >> >> >> >> --with-sowing=0
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> I was able con configure and compile:
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
> >> >> >> > >> >> >> >> PETSC_ARCH=windows-intel all
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> However, when testing I got these errors:
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> $ make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
> >> >> >> > >> >> >> >> PETSC_ARCH=windows-intel test
> >> >> >> > >> >> >> >> Running test examples to verify correct installation
> >> >> >> > >> >> >> >> Using PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc and
> >> >> >> > >> >> >> >> PETSC_ARCH=windows-intel
> >> >> >> > >> >> >> >> Possible error running C/C++ src/snes/examples/tutorials/ex19
> >> >> >> > >> >> >> >> with 1 MPI process
> >> >> >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> >> >> > >> >> >> >> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > ------------------------------------------------------------------------
> >> >> >> > >> >> >> >> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation
> >> >> >> > >> >> >> >> Violation,
> >> >> >> > >> >> >> >> probably memory access out of range
> >> >> >> > >> >> >> >> [0]PETSC ERROR: Try option -start_in_debugger or
> >> >> >> > >> >> >> >> -on_error_attach_debugger
> >> >> >> > >> >> >> >> [0]PETSC ERROR: or see
> >> >> >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> >> >> >> > >> >> >> >> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and
> >> >> >> > Apple
> >> >> >> > >> >> >> >> Mac
> >> >> >> > >> >> >> >> OS X to find memory corruption errors
> >> >> >> > >> >> >> >> [0]PETSC ERROR: likely location of problem given in stack below
> >> >> >> > >> >> >> >> [0]PETSC ERROR: --------------------- Stack Frames
> >> >> >> > >> >> >> >> ------------------------------------
> >> >> >> > >> >> >> >> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are
> >> >> >> > not
> >> >> >> > >> >> >> >> available,
> >> >> >> > >> >> >> >> [0]PETSC ERROR: INSTEAD the line number of the start of
> >> >> >> > the
> >> >> >> > >> >> >> >> function
> >> >> >> > >> >> >> >> [0]PETSC ERROR: is given.
> >> >> >> > >> >> >> >> [0]PETSC ERROR: [0] VecNorm_Seq line 240
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\seq\bvec2.c
> >> >> >> > >> >> >> >> [0]PETSC ERROR: [0] VecNorm line 228
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c
> >> >> >> > >> >> >> >> [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 150
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c
> >> >> >> > >> >> >> >> [0]PETSC ERROR: [0] SNESSolve line 3847
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c
> >> >> >> > >> >> >> >> [0]PETSC ERROR: [0] main line 108
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c
> >> >> >> > >> >> >> >> [0]PETSC ERROR: --------------------- Error Message
> >> >> >> > >> >> >> >> --------------------------------------------------------------
> >> >> >> > >> >> >> >> [0]PETSC ERROR: Signal received
> >> >> >> > >> >> >> >> [0]PETSC ERROR: See
> >> >> >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html for
> >> >> >> > trouble
> >> >> >> > >> >> >> >> shooting.
> >> >> >> > >> >> >> >> [0]PETSC ERROR: Petsc Development GIT revision: unknown GIT
> >> >> >> > >> >> >> >> Date: unknown
> >> >> >> > >> >> >> >> [0]PETSC ERROR: ./ex19 on a windows-intel named HECTOR-PC by
> >> >> >> > >> >> >> >> hector
> >> >> >> > >> >> >> >> Wed Jun 17 14:21:38 2015
> >> >> >> > >> >> >> >> [0]PETSC ERROR: Configure options --with-cc="win32fe cl"
> >> >> >> > >> >> >> >> --with-fc="win32fe ifort" --prefix=/cygdrive/c/Installed/petsc/
> >> >> >> > >> >> >> >> --PETSC_ARCH=windows-intel
> >> >> >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]"
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]"
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]"
> >> >> >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]"
> >> >> >> > >> >> >> >> --with-sowing=0
> >> >> >> > >> >> >> >> [0]PETSC ERROR: #1 User provided function() line 0 in unknown
> >> >> >> > >> >> >> >> file
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> job aborted:
> >> >> >> > >> >> >> >> [ranks] message
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> [0] application aborted
> >> >> >> > >> >> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank
> >> >> >> > 0
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> ---- error analysis -----
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> [0] on hector-PC
> >> >> >> > >> >> >> >> ./ex19 aborted the job. abort code 59
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> ---- error analysis -----
> >> >> >> > >> >> >> >> Possible error running C/C++ src/snes/examples/tutorials/ex19
> >> >> >> > >> >> >> >> with 2
> >> >> >> > >> >> >> >> MPI processes
> >> >> >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> >> >> > >> >> >> >> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > ------------------------------------------------------------------------
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > ------------------------------------------------------------------------
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> Caught signal number 11 SEGV: Segmentation Violation, probably
> >> >> >> > >> >> >> >> memory
> >> >> >> > >> >> >> >> access out of range
> >> >> >> > >> >> >> >> Caught signal number 11 SEGV: Segmentation Violation, probably
> >> >> >> > >> >> >> >> memory
> >> >> >> > >> >> >> >> access out of range
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> Try option -start_in_debugger or -on_error_attach_debugger
> >> >> >> > >> >> >> >> Try option -start_in_debugger or -on_error_attach_debugger
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> or see
> >> >> >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> >> >> >> > >> >> >> >> or see
> >> >> >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> or try http://valgrind.org on GNU/linux and Apple Mac OS X to
> >> >> >> > >> >> >> >> find
> >> >> >> > >> >> >> >> memory corruption errors
> >> >> >> > >> >> >> >> or try http://valgrind.org on GNU/linux and Apple Mac OS X to
> >> >> >> > >> >> >> >> find
> >> >> >> > >> >> >> >> memory corruption errors
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> likely location of problem given in stack below
> >> >> >> > >> >> >> >> likely location of problem given in stack below
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> --------------------- Stack Frames
> >> >> >> > >> >> >> >> ------------------------------------
> >> >> >> > >> >> >> >> --------------------- Stack Frames
> >> >> >> > >> >> >> >> ------------------------------------
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> Note: The EXACT line numbers in the stack are not available,
> >> >> >> > >> >> >> >> Note: The EXACT line numbers in the stack are not available,
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> INSTEAD the line number of the start of the function
> >> >> >> > >> >> >> >> INSTEAD the line number of the start of the function
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> is given.
> >> >> >> > >> >> >> >> is given.
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> [0] VecNorm_MPI line 57
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\mpi\pvec2.c
> >> >> >> > >> >> >> >> [1] VecNorm_MPI line 57
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\mpi\pvec2.c
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> [0] VecNorm line 228
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c
> >> >> >> > >> >> >> >> [1] VecNorm line 228
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> [0] SNESSolve_NEWTONLS line 150
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c
> >> >> >> > >> >> >> >> [1] SNESSolve_NEWTONLS line 150
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> [0] SNESSolve line 3847
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c
> >> >> >> > >> >> >> >> [1] SNESSolve line 3847
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> [0] main line 108
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c
> >> >> >> > >> >> >> >> [1] main line 108
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> --------------------- Error Message
> >> >> >> > >> >> >> >> --------------------------------------------------------------
> >> >> >> > >> >> >> >> --------------------- Error Message
> >> >> >> > >> >> >> >> --------------------------------------------------------------
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> Signal received
> >> >> >> > >> >> >> >> Signal received
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html for
> >> >> >> > >> >> >> >> trouble shooting.
> >> >> >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html for
> >> >> >> > >> >> >> >> trouble shooting.
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> Petsc Development GIT revision: unknown GIT Date: unknown
> >> >> >> > >> >> >> >> Petsc Development GIT revision: unknown GIT Date: unknown
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> ./ex19 on a windows-intel named HECTOR-PC by hector Wed Jun 17
> >> >> >> > >> >> >> >> 14:21:38 2015
> >> >> >> > >> >> >> >> ./ex19 on a windows-intel named HECTOR-PC by hector Wed Jun 17
> >> >> >> > >> >> >> >> 14:21:38 2015
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> Configure options --with-cc="win32fe cl" --with-fc="win32fe
> >> >> >> > >> >> >> >> ifort"
> >> >> >> > >> >> >> >> --prefix=/cygdrive/c/Installed/petsc/
> >> >> >> > --PETSC_ARCH=windows-intel
> >> >> >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]"
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]"
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]"
> >> >> >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]"
> >> >> >> > >> >> >> >> --with-sowing=0
> >> >> >> > >> >> >> >> Configure options --with-cc="win32fe cl" --with-fc="win32fe
> >> >> >> > >> >> >> >> ifort"
> >> >> >> > >> >> >> >> --prefix=/cygdrive/c/Installed/petsc/
> >> >> >> > --PETSC_ARCH=windows-intel
> >> >> >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]"
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]"
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]"
> >> >> >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]"
> >> >> >> > >> >> >> >> --with-sowing=0
> >> >> >> > >> >> >> >> [0]PETSC ERROR:
> >> >> >> > >> >> >> >> [1]PETSC ERROR:
> >> >> >> > >> >> >> >> #1 User provided function() line 0 in unknown file
> >> >> >> > >> >> >> >> #1 User provided function() line 0 in unknown file
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> job aborted:
> >> >> >> > >> >> >> >> [ranks] message
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> [0] application aborted
> >> >> >> > >> >> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank
> >> >> >> > 0
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> [1] application aborted
> >> >> >> > >> >> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank
> >> >> >> > 1
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> ---- error analysis -----
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> [0-1] on hector-PC
> >> >> >> > >> >> >> >> ./ex19 aborted the job. abort code 59
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> ---- error analysis -----
> >> >> >> > >> >> >> >> *******************Error detected during compile or
> >> >> >> > >> >> >> >> link!*******************
> >> >> >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >> >> >> > >> >> >> >>
> >> >> >> > /cygdrive/c/Installed/petsc-dev/petsc/src/snes/examples/tutorials
> >> >> >> > >> >> >> >> ex5f
> >> >> >> > >> >> >> >> *********************************************************
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort
> >> >> >> > >> >> >> >> -c
> >> >> >> > >> >> >> >> -MT -Z7 -fpp -I/cygdrive/c/Installed/petsc-dev/petsc/include
> >> >> >> > >> >> >> >> -I/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/include
> >> >> >> > >> >> >> >> -I/cygdrive/c/Installed/parmetis/include
> >> >> >> > >> >> >> >> -I/cygdrive/c/Installed/msmpi/Include
> >> >> >> > >> >> >> >> -I/cygdrive/c/Installed/msmpi/Include/x64 -o ex5f.o ex5f.F
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort
> >> >> >> > >> >> >> >> -MT
> >> >> >> > >> >> >> >> -Z7 -fpp -o ex5f ex5f.o
> >> >> >> > >> >> >> >> -L/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/lib
> >> >> >> > >> >> >> >> -lpetsc
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/parmetis/lib/parmetis.lib
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/parmetis/lib/metis.lib
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib
> >> >> >> > >> >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib Gdi32.lib
> >> >> >> > >> >> >> >> User32.lib
> >> >> >> > >> >> >> >> Advapi32.lib Kernel32.lib Ws2_32.lib
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESCREATE
> >> >> >> > >> >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> >> DMCREATEGLOBALVECTOR referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > VECDUPLICATE
> >> >> >> > >> >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> >> DMDAGETCORNERS
> >> >> >> > >> >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> >> DMDAGETGHOSTCORNERS referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESSETDM
> >> >> >> > >> >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> >> SNESSETFROMOPTIONS referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> >> SNESGETITERATIONNUMBER referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol VECDESTROY
> >> >> >> > >> >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > SNESDESTROY
> >> >> >> > >> >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol DMDESTROY
> >> >> >> > >> >> >> >> referenced in function MAIN__
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> >> MATSETVALUESLOCAL
> >> >> >> > >> >> >> >> referenced in function FORMJACOBIANLOCAL
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> >> MATASSEMBLYBEGIN
> >> >> >> > >> >> >> >> referenced in function FORMJACOBIANLOCAL
> >> >> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
> >> >> >> > >> >> >> >> MATASSEMBLYEND
> >> >> >> > >> >> >> >> referenced in function FORMJACOBIANLOCAL
> >> >> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex5f.exe
> >> >> >> > :
> >> >> >> > >> >> >> >> fatal
> >> >> >> > >> >> >> >> error LNK1120: 14 unresolved externals
> >> >> >> > >> >> >> >> makefile:50: recipe for target 'ex5f' failed
> >> >> >> > >> >> >> >> make[3]: [ex5f] Error 96 (ignored)
> >> >> >> > >> >> >> >> /usr/bin/rm -f ex5f.o
> >> >> >> > >> >> >> >> Completed test examples
> >> >> >> > >> >> >> >> =========================================
> >> >> >> > >> >> >> >> Now to evaluate the computer systems you plan use - do:
> >> >> >> > >> >> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
> >> >> >> > >> >> >> >> PETSC_ARCH=windows-intel streams NPMAX=<number of MPI processes
> >> >> >> > >> >> >> >> you
> >> >> >> > >> >> >> >> intend to use>
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> Best Regards,
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >> Hector
> >> >> >> > >> >> >> >>
> >> >> >> > >> >> >> >
> >> >> >> > >> >> >>
> >> >> >> > >> >> >
> >> >> >> > >> >>
> >> >> >> > >> >
> >> >> >> > >
> >> >> >> > >
> >> >> >> > >
> >> >> >> > >
> >> >> >> > > --
> >> >> >> > > What most experimenters take for granted before they begin their
> >> >> >> > experiments
> >> >> >> > > is infinitely more interesting than any results to which their
> >> >> >> > experiments
> >> >> >> > > lead.
> >> >> >> > > -- Norbert Wiener
> >> >> >> >
> >> >> >>
> >> >> >>
> >> >> >>
> >> >> >>
> >> >> >
> >> >>
> >> >
> >>
> >
>
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