[petsc-dev] [petsc-maint] Errors when testing PETSc build on Windows
Hector E Barrios Molano
hectorb at utexas.edu
Thu Jun 18 16:02:38 CDT 2015
Hi Satish,
attached is configure.log compressed
On Thu, Jun 18, 2015 at 2:46 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> Can you send configure.log?
>
>
> Satish
>
> On Thu, 18 Jun 2015, Hector E Barrios Molano wrote:
>
>> Hi Satish and Matt,
>>
>> I just cloned it again and I'm still having the same problem:
>>
>> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort'
>> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel
>> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
>> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
>> --with-metis-include=/cygdrive/c/Installed/parmetis/include
>> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
>> --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]
>> --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]
>> --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]
>> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
>> --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib]
>> ===============================================================================
>> Configuring PETSc to compile on your system
>> ===============================================================================
>> ===============================================================================
>>
>>
>> *****WARNING:
>> PETSC_DIR appears to be a Git clone - but git is not found in
>> PATH********
>>
>>
>> ===============================================================================
>>
>> ===============================================================================
>> Trying to
>> download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz
>> for SOWING
>> ===============================================================================
>>
>> ===============================================================================
>> Running
>> configure on SOWING; this may take several minutes
>>
>> ===============================================================================
>>
>> ===============================================================================
>> Running
>> make on SOWING; this may take several minutes
>>
>> ===============================================================================
>>
>> ===============================================================================
>> Running
>> make install on SOWING; this may take several minutes
>>
>> ===============================================================================
>> TESTING:
>> checkSharedLibrary from
>> config.packages.sowing(config/BuildSystem/config/package.py:625)
>>
>> *******************************************************************************
>> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
>> for details):
>> -------------------------------------------------------------------------------
>> *******Error generating Fortran stubs: Error running bfort
>> cd /cygdrive/c/Installed/petsc-dev/petsc/include;
>> BFORT_CONFIG_PATH=/cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf
>> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/bin/bfort -dir
>> /cygdrive/c/Installed/petsc-dev/petsc/include/ftn-auto -mnative -ansi
>> -nomsgs -noprofile -anyname -mapptr -mpi -mpi2 -ferr -ptrprefix Petsc
>> -ptr64 PETSC_USE_POINTER_CONVERSION -fcaps PETSC_HAVE_FORTRAN_CAPS
>> -fuscore PETSC_HAVE_FORTRAN_UNDERSCORE -f90mod_skip_header -f90modfile
>> f90module.f90 petsc.h petscao.h petscbag.h petscblaslapack.h
>> petscblaslapack_c.h petscblaslapack_caps.h petscblaslapack_stdcall.h
>> petscblaslapack_uscore.h petscbt.h petsccharacteristic.h petscctable.h
>> petsccusp.h petscdm.h petscdmcomposite.h petscdmda.h petscdmdatypes.h
>> petscdmmoab.h petscdmnetwork.h petscdmpatch.h petscdmplex.h
>> petscdmredundant.h petscdmshell.h petscdmsliced.h petscdmtypes.h
>> petscdraw.h petscdrawtypes.h petscds.h petscdstypes.h petscdt.h
>> petscerror.h petscfe.h petscfetypes.h petscfv.h petscfvtypes.h
>> petscis.h petscistypes.h petscksp.h petsclog.h petscmat.h
>> petscmatelemental.h petscmath.h petscmatlab.h petscoptions.h petscpc.h
>> petscpctypes.h petscpf.h petscsf.h petscsftypes.h petscsnes.h
>> petscsys.h petsctao.h petsctaolinesearch.h petsctime.h petscts.h
>> petscvalgrind.h petscvec.h petscversion.h petscviennacl.h
>> petscviewer.h petscviewerhdf5.h petscviewersaws.h petscviewertypes.h
>> petscwebclient.h
>> Testing path as file /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf
>> Testing file /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf/bfort-base.txt
>> Testing file /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt
>> Testing path as file /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share
>> Testing file /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share/bfort-base.txt
>> Testing file /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt
>> Unable to find bfort-base.txt config file in
>> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share*******
>> *******************************************************************************
>>
>>
>> Hector
>>
>> On Thu, Jun 18, 2015 at 1:46 PM, Satish Balay <balay at mcs.anl.gov> wrote:
>> > On Thu, 18 Jun 2015, Matthew Knepley wrote:
>> >
>> >> On Thu, Jun 18, 2015 at 12:09 PM, Hector E Barrios Molano <
>> >> hectorb at utexas.edu> wrote:
>> >>
>> >> > yes I cloned it from git.
>> >> >
>> >>
>> >> There appears to be a problem with your clone. Can you clone it again?
>> >
>> > The following is equivalent to a fresh clone [without needing the extra
>> > network traffic]
>> >
>> > rm -rf arch*
>> > git clean -f -d -x
>> >
>> > Satish
>> >
>> >
>> >>
>> >> Thanks,
>> >>
>> >> Matt
>> >>
>> >>
>> >> > On Thu, Jun 18, 2015 at 12:06 PM, Matthew Knepley <knepley at gmail.com>
>> >> > wrote:
>> >> > > On Thu, Jun 18, 2015 at 11:57 AM, Hector E Barrios Molano
>> >> > > <hectorb at utexas.edu> wrote:
>> >> > >>
>> >> > >> Hi Satish,
>> >> > >>
>> >> > >> Now I'm getting this error. Why its trying to use "bfort"?
>> >> > >
>> >> > >
>> >> > > When using a clone, it tries to run 'bfort'. Are you trying to use a
>> >> > clone?
>> >> > >
>> >> > > Thanks,
>> >> > >
>> >> > > Matt
>> >> > >
>> >> > >>
>> >> > >> Thank you,
>> >> > >>
>> >> > >>
>> >> > >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort'
>> >> > >> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel
>> >> > >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
>> >> > >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
>> >> > >>
>> >> > >>
>> >> > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]
>> >> > >>
>> >> > >>
>> >> > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]
>> >> > >>
>> >> > >>
>> >> > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]
>> >> > >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
>> >> > >>
>> >> > >>
>> >> > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib]
>> >> > >>
>> >> > >>
>> >> > ===============================================================================
>> >> > >> Configuring PETSc to compile on your system
>> >> > >>
>> >> > >>
>> >> > ===============================================================================
>> >> > >>
>> >> > >>
>> >> > ===============================================================================
>> >> > >>
>> >> > >>
>> >> > >> *****WARNING:
>> >> > >> PETSC_DIR appears to be a Git clone - but git is not found in
>> >> > >> PATH********
>> >> > >>
>> >> > >>
>> >> > >>
>> >> > >>
>> >> > ===============================================================================
>> >> > >>
>> >> > >>
>> >> > >>
>> >> > ===============================================================================
>> >> > >> Running
>> >> > >> configure on SOWING; this may take several minutes
>> >> > >>
>> >> > >>
>> >> > >>
>> >> > ===============================================================================
>> >> > >>
>> >> > >>
>> >> > >>
>> >> > ===============================================================================
>> >> > >> Running
>> >> > >> make on SOWING; this may take several minutes
>> >> > >>
>> >> > >>
>> >> > >>
>> >> > ===============================================================================
>> >> > >>
>> >> > >>
>> >> > >>
>> >> > ===============================================================================
>> >> > >> Running
>> >> > >> make install on SOWING; this may take several minutes
>> >> > >>
>> >> > >>
>> >> > >>
>> >> > ===============================================================================
>> >> > >> TESTING:
>> >> > >> checkSharedLibrary from
>> >> > >> config.packages.sowing(config/BuildSystem/config/package.py:625)
>> >> > >>
>> >> > >>
>> >> > >>
>> >> > *******************************************************************************
>> >> > >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
>> >> > >> for details):
>> >> > >>
>> >> > >>
>> >> > -------------------------------------------------------------------------------
>> >> > >> *******Error generating Fortran stubs: Error running bfort
>> >> > >> cd /cygdrive/c/Installed/petsc-dev/petsc/include;
>> >> > >> BFORT_CONFIG_PATH=/cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf
>> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/bin/bfort -dir
>> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/include/ftn-auto -mnative -ansi
>> >> > >> -nomsgs -noprofile -anyname -mapptr -mpi -mpi2 -ferr -ptrprefix Petsc
>> >> > >> -ptr64 PETSC_USE_POINTER_CONVERSION -fcaps PETSC_HAVE_FORTRAN_CAPS
>> >> > >> -fuscore PETSC_HAVE_FORTRAN_UNDERSCORE -f90mod_skip_header -f90modfile
>> >> > >> f90module.f90 petsc.h petscao.h petscbag.h petscblaslapack.h
>> >> > >> petscblaslapack_c.h petscblaslapack_caps.h petscblaslapack_stdcall.h
>> >> > >> petscblaslapack_uscore.h petscbt.h petsccharacteristic.h petscctable.h
>> >> > >> petsccusp.h petscdm.h petscdmcomposite.h petscdmda.h petscdmdatypes.h
>> >> > >> petscdmmoab.h petscdmnetwork.h petscdmpatch.h petscdmplex.h
>> >> > >> petscdmredundant.h petscdmshell.h petscdmsliced.h petscdmtypes.h
>> >> > >> petscdraw.h petscdrawtypes.h petscds.h petscdstypes.h petscdt.h
>> >> > >> petscerror.h petscfe.h petscfetypes.h petscfv.h petscfvtypes.h
>> >> > >> petscis.h petscistypes.h petscksp.h petsclog.h petscmat.h
>> >> > >> petscmatelemental.h petscmath.h petscmatlab.h petscoptions.h petscpc.h
>> >> > >> petscpctypes.h petscpf.h petscsf.h petscsftypes.h petscsnes.h
>> >> > >> petscsys.h petsctao.h petsctaolinesearch.h petsctime.h petscts.h
>> >> > >> petscvalgrind.h petscvec.h petscversion.h petscviennacl.h
>> >> > >> petscviewer.h petscviewerhdf5.h petscviewersaws.h petscviewertypes.h
>> >> > >> petscwebclient.h
>> >> > >> Testing path as file
>> >> > /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf
>> >> > >> Testing file
>> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/lib/petsc/conf/bfort-base.txt
>> >> > >> Testing file
>> >> > /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt
>> >> > >> Testing path as file
>> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share
>> >> > >> Testing file
>> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share/bfort-base.txt
>> >> > >> Testing file
>> >> > /cygdrive/c/Installed/petsc-dev/petsc/include/bfort-base.txt
>> >> > >> Unable to find bfort-base.txt config file in
>> >> > >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/share*******
>> >> > >>
>> >> > >>
>> >> > *******************************************************************************
>> >> > >>
>> >> > >> Hector
>> >> > >>
>> >> > >> On Wed, Jun 17, 2015 at 5:16 PM, Satish Balay <balay at mcs.anl.gov>
>> >> > wrote:
>> >> > >> > Hm - perhaps you have a different 'find' command in your path. What do
>> >> > >> > you have for:
>> >> > >> >
>> >> > >> > which find
>> >> > >> >
>> >> > >> > Try:
>> >> > >> >
>> >> > >> > export PATH=/usr/bin:${PATH}
>> >> > >> >
>> >> > >> > and rerun configure
>> >> > >> >
>> >> > >> > We should look at replacing all shell code with python equivalent..
>> >> > >> >
>> >> > >> > Satish
>> >> > >> >
>> >> > >> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote:
>> >> > >> >
>> >> > >> >> Hi Satish,
>> >> > >> >>
>> >> > >> >> Taking out --with-sowing=0 gives me:
>> >> > >> >>
>> >> > >> >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort'
>> >> > >> >> --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel
>> >> > >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> >> --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
>> >> > >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
>> >> > >> >>
>> >> > >> >>
>> >> > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]
>> >> > >> >>
>> >> > >> >>
>> >> > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]
>> >> > >> >>
>> >> > >> >>
>> >> > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]
>> >> > >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
>> >> > >> >>
>> >> > >> >>
>> >> > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib]
>> >> > >> >>
>> >> > >> >>
>> >> > ===============================================================================
>> >> > >> >> Configuring PETSc to compile on your system
>> >> > >> >>
>> >> > >> >>
>> >> > ===============================================================================
>> >> > >> >>
>> >> > >> >>
>> >> > ===============================================================================
>> >> > >> >>
>> >> > >> >>
>> >> > >> >> *****WARNING:
>> >> > >> >> PETSC_DIR appears to be a Git clone - but git is not found in
>> >> > >> >> PATH********
>> >> > >> >>
>> >> > >> >>
>> >> > >> >>
>> >> > >> >>
>> >> > ===============================================================================
>> >> > >> >>
>> >> > >> >>
>> >> > >> >>
>> >> > ===============================================================================
>> >> > >> >> Trying to
>> >> > >> >> download
>> >> > >> >>
>> >> > http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz
>> >> > >> >> for SOWING
>> >> > >> >>
>> >> > >> >>
>> >> > ===============================================================================
>> >> > >> >>
>> >> > >> >>
>> >> > >> >>
>> >> > ===============================================================================
>> >> > >> >> Trying to
>> >> > >> >> download
>> >> > >> >>
>> >> > ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/sowing-1.1.17-p1.tar.gz
>> >> > >> >> for SOWING
>> >> > >> >>
>> >> > >> >>
>> >> > ===============================================================================
>> >> > >> >>
>> >> > >> >>
>> >> > >> >>
>> >> > >> >>
>> >> > >> >>
>> >> > *******************************************************************************
>> >> > >> >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
>> >> > >> >> for details):
>> >> > >> >>
>> >> > >> >>
>> >> > -------------------------------------------------------------------------------
>> >> > >> >> Error changing permissions for sowing-1.1.17-p1 obtained from
>> >> > >> >>
>> >> > >> >>
>> >> > /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages/_d_sowing-1.1.17-p1.tar.gz
>> >> > >> >> : Could not execute "cd
>> >> > >> >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages;
>> >> > >> >> chmod -R a+r sowing-1.1.17-p1;find sowing-1.1.17-p1 -type d -name
>> >> > "*"
>> >> > >> >> -exec chmod a+rx {} \;":
>> >> > >> >> FIND: Parameter format not correct
>> >> > >> >> Error changing permissions for sowing-1.1.17-p1 obtained from
>> >> > >> >>
>> >> > >> >>
>> >> > /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages/_d_sowing-1.1.17-p1.tar.gz
>> >> > >> >> : Could not execute "cd
>> >> > >> >> /cygdrive/c/Installed/petsc-dev/petsc/windows-intel/externalpackages;
>> >> > >> >> chmod -R a+r sowing-1.1.17-p1;find sowing-1.1.17-p1 -type d -name
>> >> > "*"
>> >> > >> >> -exec chmod a+rx {} \;":
>> >> > >> >> FIND: Parameter format not correct
>> >> > >> >>
>> >> > >> >>
>> >> > *******************************************************************************
>> >> > >> >>
>> >> > >> >> On Wed, Jun 17, 2015 at 3:36 PM, Satish Balay <balay at mcs.anl.gov>
>> >> > >> >> wrote:
>> >> > >> >> >> --with-sowing=0
>> >> > >> >> >
>> >> > >> >> > 1. make sure you have cygwin gcc/g++ installed.
>> >> > >> >> > 2. configure PETSc without the above option [and rebuild the
>> >> > >> >> > libraries]
>> >> > >> >> >
>> >> > >> >> > Satish
>> >> > >> >> >
>> >> > >> >> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote:
>> >> > >> >> >
>> >> > >> >> >> Hi Satish,
>> >> > >> >> >>
>> >> > >> >> >> Thank you! It solved some errors. However, I'm still having
>> >> > problems
>> >> > >> >> >> with the Fortran test.
>> >> > >> >> >>
>> >> > >> >> >> $ make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
>> >> > >> >> >> PETSC_ARCH=windows-intel test
>> >> > >> >> >> Running test examples to verify correct installation
>> >> > >> >> >> Using PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc and
>> >> > >> >> >> PETSC_ARCH=windows-intel
>> >> > >> >> >> C/C++ example src/snes/examples/tutorials/ex19 run successfully
>> >> > with
>> >> > >> >> >> 1
>> >> > >> >> >> MPI process
>> >> > >> >> >> C/C++ example src/snes/examples/tutorials/ex19 run successfully
>> >> > with
>> >> > >> >> >> 2
>> >> > >> >> >> MPI processes
>> >> > >> >> >> *******************Error detected during compile or
>> >> > >> >> >> link!*******************
>> >> > >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
>> >> > >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/src/snes/examples/tutorials
>> >> > >> >> >> ex5f
>> >> > >> >> >> *********************************************************
>> >> > >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort -c
>> >> > >> >> >> -MT -Z7 -fpp -I/cygdrive/c/Installed/petsc-dev/petsc/include
>> >> > >> >> >> -I/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/include
>> >> > >> >> >> -I/cygdrive/c/Installed/parmetis/include
>> >> > >> >> >> -I/cygdrive/c/Installed/msmpi/Include
>> >> > >> >> >> -I/cygdrive/c/Installed/msmpi/Include/x64 -o ex5f.o ex5f.F
>> >> > >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort
>> >> > -MT
>> >> > >> >> >> -Z7 -fpp -o ex5f ex5f.o
>> >> > >> >> >> -L/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/lib -lpetsc
>> >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib
>> >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib
>> >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib
>> >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib
>> >> > >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib
>> >> > >> >> >> /cygdrive/c/Installed/parmetis/lib/parmetis.lib
>> >> > >> >> >> /cygdrive/c/Installed/parmetis/lib/metis.lib
>> >> > >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib
>> >> > >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib Gdi32.lib
>> >> > >> >> >> User32.lib
>> >> > >> >> >> Advapi32.lib Kernel32.lib Ws2_32.lib
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESCREATE
>> >> > >> >> >> referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> DMCREATEGLOBALVECTOR referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol VECDUPLICATE
>> >> > >> >> >> referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > DMDAGETCORNERS
>> >> > >> >> >> referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> DMDAGETGHOSTCORNERS referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESSETDM
>> >> > >> >> >> referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> SNESSETFROMOPTIONS referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> SNESGETITERATIONNUMBER referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol VECDESTROY
>> >> > >> >> >> referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESDESTROY
>> >> > >> >> >> referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol DMDESTROY
>> >> > >> >> >> referenced in function MAIN__
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> MATSETVALUESLOCAL
>> >> > >> >> >> referenced in function FORMJACOBIANLOCAL
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> MATASSEMBLYBEGIN
>> >> > >> >> >> referenced in function FORMJACOBIANLOCAL
>> >> > >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > MATASSEMBLYEND
>> >> > >> >> >> referenced in function FORMJACOBIANLOCAL
>> >> > >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex5f.exe :
>> >> > >> >> >> fatal
>> >> > >> >> >> error LNK1120: 14 unresolved externals
>> >> > >> >> >> makefile:50: recipe for target 'ex5f' failed
>> >> > >> >> >> make[3]: [ex5f] Error 96 (ignored)
>> >> > >> >> >> /usr/bin/rm -f ex5f.o
>> >> > >> >> >> Completed test examples
>> >> > >> >> >> =========================================
>> >> > >> >> >> Now to evaluate the computer systems you plan use - do:
>> >> > >> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
>> >> > >> >> >> PETSC_ARCH=windows-intel streams NPMAX=<number of MPI processes
>> >> > you
>> >> > >> >> >> intend to use>
>> >> > >> >> >>
>> >> > >> >> >> On Wed, Jun 17, 2015 at 3:01 PM, Satish Balay <balay at mcs.anl.gov>
>> >> > >> >> >> wrote:
>> >> > >> >> >> > /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib
>> >> > >> >> >> >
>> >> > >> >> >> > This is the wrong version of MKL. You should look for lp64
>> >> > variant
>> >> > >> >> >> > [not ilp64]
>> >> > >> >> >> >
>> >> > >> >> >> > [you can just edit
>> >> > >> >> >> > PETSC_DIR/PETSC_ARCH/lib/petsc/conf/petscvariables and make this
>> >> > >> >> >> > change manually - and retry compiling the example]
>> >> > >> >> >> >
>> >> > >> >> >> > Satish
>> >> > >> >> >> >
>> >> > >> >> >> > On Wed, 17 Jun 2015, Hector E Barrios Molano wrote:
>> >> > >> >> >> >
>> >> > >> >> >> >> Hi PETSc Experts!
>> >> > >> >> >> >>
>> >> > >> >> >> >> I'm trying to build PETSc on a Windows machine, I got errors
>> >> > >> >> >> >> during
>> >> > >> >> >> >> the test part. I downloaded petsc-dev from git.
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > >> >> >> >> This are my configuration command:
>> >> > >> >> >> >>
>> >> > >> >> >> >> $ ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort'
>> >> > >> >> >> >> --prefix=/cygdrive/c/Installed/petsc/
>> >> > --PETSC_ARCH=windows-intel
>> >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
>> >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-mpi-include=[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-mpi-lib=[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-blas-lapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]
>> >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-scalapack-lib=[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]
>> >> > >> >> >> >> --with-sowing=0
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > >> >> >> >> I was able con configure and compile:
>> >> > >> >> >> >>
>> >> > >> >> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
>> >> > >> >> >> >> PETSC_ARCH=windows-intel all
>> >> > >> >> >> >>
>> >> > >> >> >> >> However, when testing I got these errors:
>> >> > >> >> >> >>
>> >> > >> >> >> >> $ make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
>> >> > >> >> >> >> PETSC_ARCH=windows-intel test
>> >> > >> >> >> >> Running test examples to verify correct installation
>> >> > >> >> >> >> Using PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc and
>> >> > >> >> >> >> PETSC_ARCH=windows-intel
>> >> > >> >> >> >> Possible error running C/C++ src/snes/examples/tutorials/ex19
>> >> > >> >> >> >> with 1 MPI process
>> >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
>> >> > >> >> >> >> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > ------------------------------------------------------------------------
>> >> > >> >> >> >> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation
>> >> > >> >> >> >> Violation,
>> >> > >> >> >> >> probably memory access out of range
>> >> > >> >> >> >> [0]PETSC ERROR: Try option -start_in_debugger or
>> >> > >> >> >> >> -on_error_attach_debugger
>> >> > >> >> >> >> [0]PETSC ERROR: or see
>> >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
>> >> > >> >> >> >> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and
>> >> > Apple
>> >> > >> >> >> >> Mac
>> >> > >> >> >> >> OS X to find memory corruption errors
>> >> > >> >> >> >> [0]PETSC ERROR: likely location of problem given in stack below
>> >> > >> >> >> >> [0]PETSC ERROR: --------------------- Stack Frames
>> >> > >> >> >> >> ------------------------------------
>> >> > >> >> >> >> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are
>> >> > not
>> >> > >> >> >> >> available,
>> >> > >> >> >> >> [0]PETSC ERROR: INSTEAD the line number of the start of
>> >> > the
>> >> > >> >> >> >> function
>> >> > >> >> >> >> [0]PETSC ERROR: is given.
>> >> > >> >> >> >> [0]PETSC ERROR: [0] VecNorm_Seq line 240
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\seq\bvec2.c
>> >> > >> >> >> >> [0]PETSC ERROR: [0] VecNorm line 228
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c
>> >> > >> >> >> >> [0]PETSC ERROR: [0] SNESSolve_NEWTONLS line 150
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c
>> >> > >> >> >> >> [0]PETSC ERROR: [0] SNESSolve line 3847
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c
>> >> > >> >> >> >> [0]PETSC ERROR: [0] main line 108
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c
>> >> > >> >> >> >> [0]PETSC ERROR: --------------------- Error Message
>> >> > >> >> >> >> --------------------------------------------------------------
>> >> > >> >> >> >> [0]PETSC ERROR: Signal received
>> >> > >> >> >> >> [0]PETSC ERROR: See
>> >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html for
>> >> > trouble
>> >> > >> >> >> >> shooting.
>> >> > >> >> >> >> [0]PETSC ERROR: Petsc Development GIT revision: unknown GIT
>> >> > >> >> >> >> Date: unknown
>> >> > >> >> >> >> [0]PETSC ERROR: ./ex19 on a windows-intel named HECTOR-PC by
>> >> > >> >> >> >> hector
>> >> > >> >> >> >> Wed Jun 17 14:21:38 2015
>> >> > >> >> >> >> [0]PETSC ERROR: Configure options --with-cc="win32fe cl"
>> >> > >> >> >> >> --with-fc="win32fe ifort" --prefix=/cygdrive/c/Installed/petsc/
>> >> > >> >> >> >> --PETSC_ARCH=windows-intel
>> >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
>> >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]"
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]"
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]"
>> >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]"
>> >> > >> >> >> >> --with-sowing=0
>> >> > >> >> >> >> [0]PETSC ERROR: #1 User provided function() line 0 in unknown
>> >> > >> >> >> >> file
>> >> > >> >> >> >>
>> >> > >> >> >> >> job aborted:
>> >> > >> >> >> >> [ranks] message
>> >> > >> >> >> >>
>> >> > >> >> >> >> [0] application aborted
>> >> > >> >> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank
>> >> > 0
>> >> > >> >> >> >>
>> >> > >> >> >> >> ---- error analysis -----
>> >> > >> >> >> >>
>> >> > >> >> >> >> [0] on hector-PC
>> >> > >> >> >> >> ./ex19 aborted the job. abort code 59
>> >> > >> >> >> >>
>> >> > >> >> >> >> ---- error analysis -----
>> >> > >> >> >> >> Possible error running C/C++ src/snes/examples/tutorials/ex19
>> >> > >> >> >> >> with 2
>> >> > >> >> >> >> MPI processes
>> >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
>> >> > >> >> >> >> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > ------------------------------------------------------------------------
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > ------------------------------------------------------------------------
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> Caught signal number 11 SEGV: Segmentation Violation, probably
>> >> > >> >> >> >> memory
>> >> > >> >> >> >> access out of range
>> >> > >> >> >> >> Caught signal number 11 SEGV: Segmentation Violation, probably
>> >> > >> >> >> >> memory
>> >> > >> >> >> >> access out of range
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> Try option -start_in_debugger or -on_error_attach_debugger
>> >> > >> >> >> >> Try option -start_in_debugger or -on_error_attach_debugger
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> or see
>> >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
>> >> > >> >> >> >> or see
>> >> > >> >> >> >> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> or try http://valgrind.org on GNU/linux and Apple Mac OS X to
>> >> > >> >> >> >> find
>> >> > >> >> >> >> memory corruption errors
>> >> > >> >> >> >> or try http://valgrind.org on GNU/linux and Apple Mac OS X to
>> >> > >> >> >> >> find
>> >> > >> >> >> >> memory corruption errors
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> likely location of problem given in stack below
>> >> > >> >> >> >> likely location of problem given in stack below
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> --------------------- Stack Frames
>> >> > >> >> >> >> ------------------------------------
>> >> > >> >> >> >> --------------------- Stack Frames
>> >> > >> >> >> >> ------------------------------------
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> Note: The EXACT line numbers in the stack are not available,
>> >> > >> >> >> >> Note: The EXACT line numbers in the stack are not available,
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> INSTEAD the line number of the start of the function
>> >> > >> >> >> >> INSTEAD the line number of the start of the function
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> is given.
>> >> > >> >> >> >> is given.
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> [0] VecNorm_MPI line 57
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\mpi\pvec2.c
>> >> > >> >> >> >> [1] VecNorm_MPI line 57
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\impls\mpi\pvec2.c
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> [0] VecNorm line 228
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c
>> >> > >> >> >> >> [1] VecNorm line 228
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\vec\vec\INTERF~1\rvector.c
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> [0] SNESSolve_NEWTONLS line 150
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c
>> >> > >> >> >> >> [1] SNESSolve_NEWTONLS line 150
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\impls\ls\ls.c
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> [0] SNESSolve line 3847
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c
>> >> > >> >> >> >> [1] SNESSolve line 3847
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\INTERF~1\snes.c
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> [0] main line 108
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c
>> >> > >> >> >> >> [1] main line 108
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex19.c
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> --------------------- Error Message
>> >> > >> >> >> >> --------------------------------------------------------------
>> >> > >> >> >> >> --------------------- Error Message
>> >> > >> >> >> >> --------------------------------------------------------------
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> Signal received
>> >> > >> >> >> >> Signal received
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html for
>> >> > >> >> >> >> trouble shooting.
>> >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html for
>> >> > >> >> >> >> trouble shooting.
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> Petsc Development GIT revision: unknown GIT Date: unknown
>> >> > >> >> >> >> Petsc Development GIT revision: unknown GIT Date: unknown
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> ./ex19 on a windows-intel named HECTOR-PC by hector Wed Jun 17
>> >> > >> >> >> >> 14:21:38 2015
>> >> > >> >> >> >> ./ex19 on a windows-intel named HECTOR-PC by hector Wed Jun 17
>> >> > >> >> >> >> 14:21:38 2015
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> Configure options --with-cc="win32fe cl" --with-fc="win32fe
>> >> > >> >> >> >> ifort"
>> >> > >> >> >> >> --prefix=/cygdrive/c/Installed/petsc/
>> >> > --PETSC_ARCH=windows-intel
>> >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
>> >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]"
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]"
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]"
>> >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]"
>> >> > >> >> >> >> --with-sowing=0
>> >> > >> >> >> >> Configure options --with-cc="win32fe cl" --with-fc="win32fe
>> >> > >> >> >> >> ifort"
>> >> > >> >> >> >> --prefix=/cygdrive/c/Installed/petsc/
>> >> > --PETSC_ARCH=windows-intel
>> >> > >> >> >> >> --with-parmetis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib
>> >> > >> >> >> >> --with-metis-include=/cygdrive/c/Installed/parmetis/include
>> >> > >> >> >> >> --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]"
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]"
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]"
>> >> > >> >> >> >> --with-scalapack-include=/cygdrive/c/Installed/mkl/include
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib]"
>> >> > >> >> >> >> --with-sowing=0
>> >> > >> >> >> >> [0]PETSC ERROR:
>> >> > >> >> >> >> [1]PETSC ERROR:
>> >> > >> >> >> >> #1 User provided function() line 0 in unknown file
>> >> > >> >> >> >> #1 User provided function() line 0 in unknown file
>> >> > >> >> >> >>
>> >> > >> >> >> >> job aborted:
>> >> > >> >> >> >> [ranks] message
>> >> > >> >> >> >>
>> >> > >> >> >> >> [0] application aborted
>> >> > >> >> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank
>> >> > 0
>> >> > >> >> >> >>
>> >> > >> >> >> >> [1] application aborted
>> >> > >> >> >> >> aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank
>> >> > 1
>> >> > >> >> >> >>
>> >> > >> >> >> >> ---- error analysis -----
>> >> > >> >> >> >>
>> >> > >> >> >> >> [0-1] on hector-PC
>> >> > >> >> >> >> ./ex19 aborted the job. abort code 59
>> >> > >> >> >> >>
>> >> > >> >> >> >> ---- error analysis -----
>> >> > >> >> >> >> *******************Error detected during compile or
>> >> > >> >> >> >> link!*******************
>> >> > >> >> >> >> See http://www.mcs.anl.gov/petsc/documentation/faq.html
>> >> > >> >> >> >>
>> >> > /cygdrive/c/Installed/petsc-dev/petsc/src/snes/examples/tutorials
>> >> > >> >> >> >> ex5f
>> >> > >> >> >> >> *********************************************************
>> >> > >> >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort
>> >> > >> >> >> >> -c
>> >> > >> >> >> >> -MT -Z7 -fpp -I/cygdrive/c/Installed/petsc-dev/petsc/include
>> >> > >> >> >> >> -I/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/include
>> >> > >> >> >> >> -I/cygdrive/c/Installed/parmetis/include
>> >> > >> >> >> >> -I/cygdrive/c/Installed/msmpi/Include
>> >> > >> >> >> >> -I/cygdrive/c/Installed/msmpi/Include/x64 -o ex5f.o ex5f.F
>> >> > >> >> >> >> /cygdrive/c/Installed/petsc-dev/petsc/bin/win32fe/win32fe ifort
>> >> > >> >> >> >> -MT
>> >> > >> >> >> >> -Z7 -fpp -o ex5f ex5f.o
>> >> > >> >> >> >> -L/cygdrive/c/Installed/petsc-dev/petsc/windows-intel/lib
>> >> > >> >> >> >> -lpetsc
>> >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_ilp64.lib
>> >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_ilp64.lib
>> >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_ilp64.lib
>> >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib
>> >> > >> >> >> >> /cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib
>> >> > >> >> >> >> /cygdrive/c/Installed/parmetis/lib/parmetis.lib
>> >> > >> >> >> >> /cygdrive/c/Installed/parmetis/lib/metis.lib
>> >> > >> >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib
>> >> > >> >> >> >> /cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib Gdi32.lib
>> >> > >> >> >> >> User32.lib
>> >> > >> >> >> >> Advapi32.lib Kernel32.lib Ws2_32.lib
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESCREATE
>> >> > >> >> >> >> referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> >> DMCREATEGLOBALVECTOR referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > VECDUPLICATE
>> >> > >> >> >> >> referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> >> DMDAGETCORNERS
>> >> > >> >> >> >> referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> >> DMDAGETGHOSTCORNERS referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol SNESSETDM
>> >> > >> >> >> >> referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> >> SNESSETFROMOPTIONS referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> >> SNESGETITERATIONNUMBER referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol VECDESTROY
>> >> > >> >> >> >> referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > SNESDESTROY
>> >> > >> >> >> >> referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol DMDESTROY
>> >> > >> >> >> >> referenced in function MAIN__
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> >> MATSETVALUESLOCAL
>> >> > >> >> >> >> referenced in function FORMJACOBIANLOCAL
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> >> MATASSEMBLYBEGIN
>> >> > >> >> >> >> referenced in function FORMJACOBIANLOCAL
>> >> > >> >> >> >> ex5f.obj : error LNK2019: unresolved external symbol
>> >> > >> >> >> >> MATASSEMBLYEND
>> >> > >> >> >> >> referenced in function FORMJACOBIANLOCAL
>> >> > >> >> >> >> C:\INSTAL~1\PETSC-~1\petsc\src\snes\examples\TUTORI~1\ex5f.exe
>> >> > :
>> >> > >> >> >> >> fatal
>> >> > >> >> >> >> error LNK1120: 14 unresolved externals
>> >> > >> >> >> >> makefile:50: recipe for target 'ex5f' failed
>> >> > >> >> >> >> make[3]: [ex5f] Error 96 (ignored)
>> >> > >> >> >> >> /usr/bin/rm -f ex5f.o
>> >> > >> >> >> >> Completed test examples
>> >> > >> >> >> >> =========================================
>> >> > >> >> >> >> Now to evaluate the computer systems you plan use - do:
>> >> > >> >> >> >> make PETSC_DIR=/cygdrive/c/Installed/petsc-dev/petsc
>> >> > >> >> >> >> PETSC_ARCH=windows-intel streams NPMAX=<number of MPI processes
>> >> > >> >> >> >> you
>> >> > >> >> >> >> intend to use>
>> >> > >> >> >> >>
>> >> > >> >> >> >>
>> >> > >> >> >> >> Best Regards,
>> >> > >> >> >> >>
>> >> > >> >> >> >> Hector
>> >> > >> >> >> >>
>> >> > >> >> >> >
>> >> > >> >> >>
>> >> > >> >> >
>> >> > >> >>
>> >> > >> >
>> >> > >
>> >> > >
>> >> > >
>> >> > >
>> >> > > --
>> >> > > What most experimenters take for granted before they begin their
>> >> > experiments
>> >> > > is infinitely more interesting than any results to which their
>> >> > experiments
>> >> > > lead.
>> >> > > -- Norbert Wiener
>> >> >
>> >>
>> >>
>> >>
>> >>
>> >
>>
>
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