[petsc-dev] Titan error
Barry Smith
bsmith at mcs.anl.gov
Mon Jun 8 17:50:54 CDT 2015
Did you do as Satish suggested and follow the steps we use to test for write access by creating the directory; first in the shell and then from python? Did it work?
Barry
> On Jun 8, 2015, at 5:32 PM, Mark Adams <mfadams at lbl.gov> wrote:
>
> BTW, it looks like you can configure PETSc from a home directory now on Titan.
>
> I still get this same permissions error when I try the installation with the prefix.
>
> Mark
>
> On Fri, Jun 5, 2015 at 4:24 PM, Mark Adams <mfadams at lbl.gov> wrote:
> This works without prefix. I tried prefixing to the compute directories, where I run config, and got the same error. Config thinks that it does not have permission. I did see a password prompt at one point.
>
> Treb, I just configured in a normal way and copied the directory into my home direcory. So try:
>
> make PETSC_DIR=/autofs/nccs-svm1_home1/adams/petsc_treb PETSC_ARCH=arch-titan-opt64idx-pgi
>
> Mark
>
> On Fri, Jun 5, 2015 at 9:56 AM, Mark Adams <mfadams at lbl.gov> wrote:
>
>
> On Thu, Jun 4, 2015 at 10:53 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
>
> Hmm,
>
> You do not have write permissions to the --prefix directory /autofs/na3_home1/adams/petsc_master_opt64idx_pgi
> You will be prompted for the sudo password for any external package installs
> ===============================================================================
>
> Do you have write permission for this directory?
>
> To test if you have write permission it does the following code:
>
> def setInstallDir(self):
> ''' setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH'''
> self.installSudo = ''
> self.installSudoMessage = ''
> if self.framework.argDB['prefix']:
> self.dir = self.framework.argDB['prefix']
> try:
> os.makedirs(os.path.join(self.dir,'PETScTestDirectory'))
> os.rmdir(os.path.join(self.dir,'PETScTestDirectory'))
> except:
> self.installSudoMessage = 'You do not have write permissions to the --prefix directory '+self.dir+'\nYou will be prompted for the sudo password for any external package installs'
>
>
> Can you make a directory in /autofs/na3_home1/adams/ ?
>
> This is my home directory:
>
> env003/petsc> ll -a /autofs/na3_home1/adams/
> total 20544
> drwxr-xr-x 39 adams users 12288 May 16 07:21 .
> drwxr-xr-x 5027 root root 163840 May 22 16:05 ..
> drwxr-xr-x 6 adams adams 4096 Jan 9 07:26 .allinea
>
> THis script worked a few months ago. I will try to build with a prefix, just to see if that is the only problem.
>
>
>
>
> Barry
>
> > On Jun 4, 2015, at 9:43 PM, Mark Adams <mfadams at lbl.gov> wrote:
> >
> > Yet again, this one does have a slightly amusing and slightly baffling error message though.
> > Mark
> > <configure.log>
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