[petsc-dev] PetscSSLDestroyContext

Tue Feb 17 17:35:16 CST 2015

  From the link line you sent I see it ending with 

 -L/global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib -lpetsc -lHYPRE -L/global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib -lparmetis -lmetis -lsuperlu_dist_3.3 -lparmetis -lmetis

but in the configure.log you sent I see 

PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/global/u2/m/madams/petsc_private/arch-xc30-opt64-intel/lib -L/global/u2/m/madams/petsc_private/arch-xc30-opt64-intel/lib -lHYPRE -lsuperlu_dist_3.3 -lparmetis -lmetis -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.13/intel/140/lib -L/opt/cray/hdf5-parallel/1.8.13/intel/140/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lpthread -lssl -lcrypto -ldl -lstdc++

which normally should all be appended.

 Does changing to ${PETSC_LIB}  change anything?

Barry

> On Feb 17, 2015, at 5:28 PM, Mark Adams <mfadams at lbl.gov> wrote:
> 
> Humm, we use something like:
> 
>  include ${PETSC_DIR}/lib/petsc-conf/variables
> 
> 	$(CMP) -o $(CMD) $(OPT) $(OBJ) $(LIB) ${PETSC_POST_LINK_OPTS} ${PETSC_FORTRAN_LIB} ${PETSC_KSP_LIB}
> 
> Are we blowing it?  I have not been able to integrate our makefiles to use petsc rules so I just make do with variables.
> 
> Thanks,
> Mark
> 
> 
> On Tue, Feb 17, 2015 at 5:18 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
> 
>   Well you are not linking to all the PETSc needed libraries.  I don't know where you got your makefile but it is not portable. It should link against everything that is returned from make getlinklibs which on my machine gives
> 
> $ make getlinklibs
> -Wl,-rpath,/Users/barrysmith/Src/PETSc/arch-double/lib -Wl,-rpath,/Users/barrysmith/Src/PETSc/arch-double/lib -L/Users/barrysmith/Src/PETSc/arch-double/lib -lpetsc -llapack -lblas -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 -lpthread -lssl -lcrypto -ldl
> 
> 
> 
> > On Feb 17, 2015, at 4:10 PM, Mark Adams <mfadams at lbl.gov> wrote:
> >
> > I am able to make ex61f ....
> >
> >
> > ftn -openmp -DADIOS -DADIOS_NEW_INIT -DADIOS_READ_V2 -DADIOS_WRITE_NEW -DADIOS_READ_NEW -DADIOS_TIME -DUSE_BICUB_MOD -DUSE_ONE_D_I_CUB_MOD -DTRIGRID -DNEWFIELD -DMAXWELL_V_DIST2 -DUSE_LOADING_FACTOR -DV_PERP -DSOLVERLU -O3 -no-ipo -traceback  -o xgca  -fast -no-ipo    -DPSPLINE -I/usr/common/usg/pspline/nersc1.0/intel/mod -DCAM_TIMERS -I../camtimers -I/usr/common/usg/adios/1.6.0/intel/include -I/usr/common/usg/minixml/2.7/intel/include -I/global/homes/m/madams/petsc_private//include -I/global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/include module.o bspline90_22.o taus88.o derf.o datanh.o pppack.o fmin.o bicub_mod.o search.o psmooth.o pol_decomp.o f0module.o charge.o main.o read.o gen_perm.o sort_particles.o push.o pushe.o load.o one_d_cub_mod.o collisionf.o collisionf2.o setup.o efield.o interpolation.o mpi.o diagnosis.o limiter.o bounce.o diagnosis2.o collision.o collision2.o elliptics.o diagnosis-f.o heat.o neutral2.o neutral3.o neutral.o linearsolver.o fem2d.o fem_ops.o poisson.o poisson_extra_common.o poisson_extra_xgca.o new_petsc_solver.o qevaluateandtrapped.o -L/usr/common/usg/pspline/nersc1.0/intel/lib -lpspline -lezcdf -L/usr/common/usg/adios/1.6.0/intel/lib -ladiosf -L/usr/common/usg/minixml/2.7/intel/lib -lm -lmxml -L/usr/common/usg/minixml/2.7/intel/lib -L../camtimers -ltimers   -L/global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib -lpetsc -lHYPRE -L/global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib -lparmetis -lmetis -lsuperlu_dist_3.3 -lparmetis -lmetis
> > /opt/cray/hdf5-parallel/1.8.13/INTEL/140/lib/libhdf5_parallel.a(H5PL.o): In function `H5PL_load':
> > H5PL.c:(.text+0x3b7): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
> > /global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib/libpetsc.a(send.o): In function `PetscOpenSocket':
> > /global/u2/m/madams/petsc_private/src/sys/classes/viewer/impls/socket/send.c:(.text+0xc8): warning: Using 'gethostbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
> > /global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib/libpetsc.a(client.o): In function `PetscSSLDestroyContext':
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x12): undefined reference to `SSL_CTX_free'
> > /global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib/libpetsc.a(client.o): In function `PetscHTTPSRequest':
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x60): undefined reference to `SSL_write'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x6e): undefined reference to `SSL_get_error'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0xcb): undefined reference to `SSL_read'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0xdb): undefined reference to `SSL_get_error'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0xef): undefined reference to `SSL_shutdown'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x20d): undefined reference to `SSL_free'
> > /global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib/libpetsc.a(client.o): In function `PetscHTTPSConnect':
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x1b8e): undefined reference to `SSL_new'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x1b9b): undefined reference to `BIO_new_socket'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x1ba9): undefined reference to `SSL_set_bio'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x1bb1): undefined reference to `SSL_connect'
> > /global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib/libpetsc.a(client.o): In function `PetscSSLInitializeContext':
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24a1): undefined reference to `SSLv23_method'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24a9): undefined reference to `SSL_CTX_new'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24c0): undefined reference to `SSL_CTX_ctrl'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24d0): undefined reference to `SSL_library_init'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24d5): undefined reference to `SSL_load_error_strings'
> > /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24e3): undefined reference to `BIO_new_fp'
> > /usr/bin/ld: link errors found, deleting executable `xgca'
> > make: *** [xgca] Error 1
> > 14:00 2 edison02 dev_rhager ~/epsi/XGCa$
> >
> >
> > On Tue, Feb 17, 2015 at 2:47 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
> >
> > > On Feb 17, 2015, at 1:39 PM, Mark Adams <mfadams at lbl.gov> wrote:
> > >
> > > Well, actually it is not fixed.  It does work with --with-ssl=0.  it configures and make fine but I get unresolved externals when I build.
> > > Mark
> >
> >   Please send ALL the output from when it fails when you "build" including the complete link line of what it is trying to link.
> >
> >   Barry
> >
> > >
> > > On Tue, Feb 17, 2015 at 2:15 PM, Mark Adams <mfadams at lbl.gov> wrote:
> > > I pulled and it is OK now.
> > >
> > > On Tue, Feb 17, 2015 at 12:32 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
> > >
> > >    Please send configure.log and make.log When do you get this error? Making the PETSc library? Making the PETSc test? Making application?
> > >
> > >   Yes you can configure with --with-ssl=0  but please send all the data first so we can see what goes wrong.
> > >
> > >   Barry
> > >
> > >
> > > > On Feb 17, 2015, at 10:59 AM, Mark Adams <mfadams at lbl.gov> wrote:
> > > >
> > > > I started getting this error on Edison at NERSC.  Should I configure with --with-ssl=0 ?
> > > >
> > > > Mark
> > > >
> > > > /global/homes/m/madams/petsc_master/arch-xc30-opt64-intel/lib/libpetsc.a(send.o): In function `PetscOpenSocket':
> > > > /global/u2/m/madams/petsc_master/src/sys/classes/viewer/impls/socket/send.c:(.text+0xc8): warning: Using 'gethostbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
> > > > /global/homes/m/madams/petsc_master/arch-xc30-opt64-intel/lib/libpetsc.a(client.o): In function `PetscSSLDestroyContext':
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x12): undefined reference to `SSL_CTX_free'
> > > > /global/homes/m/madams/petsc_master/arch-xc30-opt64-intel/lib/libpetsc.a(client.o): In function `PetscHTTPSRequest':
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x60): undefined reference to `SSL_write'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x6e): undefined reference to `SSL_get_error'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0xcb): undefined reference to `SSL_read'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0xdb): undefined reference to `SSL_get_error'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0xef): undefined reference to `SSL_shutdown'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x20d): undefined reference to `SSL_free'
> > > > /global/homes/m/madams/petsc_master/arch-xc30-opt64-intel/lib/libpetsc.a(client.o): In function `PetscHTTPSConnect':
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x1b8e): undefined reference to `SSL_new'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x1b9b): undefined reference to `BIO_new_socket'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x1ba9): undefined reference to `SSL_set_bio'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x1bb1): undefined reference to `SSL_connect'
> > > > /global/homes/m/madams/petsc_master/arch-xc30-opt64-intel/lib/libpetsc.a(client.o): In function `PetscSSLInitializeContext':
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24a1): undefined reference to `SSLv23_method'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24a9): undefined reference to `SSL_CTX_new'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24c0): undefined reference to `SSL_CTX_ctrl'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24d0): undefined reference to `SSL_library_init'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24d5): undefined reference to `SSL_load_error_strings'
> > > > /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24e3): undefined reference to `BIO_new_fp'
> > > > /usr/bin/ld: link errors found, deleting executable `xgca'
> > > > make: *** [xgca] Error 1
> > > >
> > >
> > >
> > >
> > > <configure.log>
> >
> >
> 
> 