[petsc-dev] KNC build?

[Satish Balay]

There is no message in configure.log. Looks like you are getting this
on the terminal.

It appears to be an icc bug. [bug report to Cray/Intel?]

You can try:

export MALLOC_CHECK_=0
./configure ...

http://stackoverflow.com/questions/151268/how-to-force-abort-on-glibc-detected-free-invalid-pointer

Satish

On Tue, 4 Nov 2014, Mark Adams wrote:

> I sent it in the previous email.  here it is again (it is small).
> 
> On Tue, Nov 4, 2014 at 5:47 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
> 
> >
> >   Cool, we need configure.log
> >
> > > On Nov 4, 2014, at 4:35 PM, Mark Adams <mfadams at lbl.gov> wrote:
> > >
> > > Additionally I get this output:
> > >
> > >
> > ===============================================================================
> > >              Configuring PETSc to compile on your system
> > >
> > ===============================================================================
> > > TESTING: checkCCompiler from
> > config.setCompilers(config/BuildSystem/config/setCompilers.py:534)
> >                               *** glibc detected *** icc: double free or
> > corruption (top): 0x00000000021a2240 ***
> > > ======= Backtrace: =========
> > > /lib64/libc.so.6(+0x75e76)[0x2ae7076cce76]
> > > /lib64/libc.so.6(+0x789b3)[0x2ae7076cf9b3]
> > > /lib64/libc.so.6(fclose+0x14d)[0x2ae7076bd4dd]
> > > icc[0x4fc06c]
> > > icc[0x4f3177]
> > > icc[0x4fc151]
> > > icc[0x4fc05e]
> > >    .....
> > >
> > >
> > > On Tue, Nov 4, 2014 at 3:59 PM, Mark Adams <mfadams at lbl.gov> wrote:
> > > Thanks Victor,
> > >
> > > I am getting cc error.  Any ideas?
> > > Mark
> > >
> > >
> > > On Tue, Nov 4, 2014 at 12:38 PM, Victor Eijkhout <
> > eijkhout at tacc.utexas.edu> wrote:
> > >
> > > > On Nov 4, 2014, at 11:32 AM, Mark Adams <mfadams at lbl.gov> wrote:
> > > >
> > > > Has anyone built PETSc on KNC (Babbage at NERSC to be specific)?
> > >
> > > At TACC under intel 14:
> > >
> > > CEE_OPTIONS="-mmic -mkl -fp-model precise"
> > > ./configure --PETSC_ARCH=mic --with-fc=0 --with-debug=0 \
> > >     --with-batch=1 --CPPFLAGS=-mmic \
> > >     --CFLAGS="${CEE_OPTIONS}" --CXXFLAGS="${CEE_OPTIONS}"
> > --FFLAGS="${CEE_OPTIONS}" \
> > >     --with-mpi=1 --known-mpi-shared-libraries=1 \
> > >         --with-mpi-include=${MPICH_HOME}/mic/include \
> > >         --with-mpi-lib=${MPICH_HOME}/mic/lib \
> > >         --with-mpicc=/opt/apps/intel13/impi/4.1.0.030/intel64/bin/mpicc
> > \
> > >         --with-mpicxx=/opt/apps/intel13/impi/
> > 4.1.0.030/intel64/bin/mpicxx \
> > >         --with-mpif90=/opt/apps/intel13/impi/
> > 4.1.0.030/intel64/bin/mpif90
> > >
> > > That first line is still giving me problems. Just nix the fp-model.
> > >
> > > Victor.
> > >
> > >
> > >
> >
> >
>