[petsc-dev] builder.py error, recursing differently from other build systems

[Jed Brown]

Building shared library /home/balay/petsc.clone-3/arch-c-exodus-dbg-builder/lib/libpetsc.so
Rebuilding Dependencies
      ERROR: Change Makefile to makefile in /home/balay/petsc.clone-3/arch-c-exodus-dbg-builder

http://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/2013/10/08/build_master_arch-c-exodus-dbg-builder_bb-proxy.log


Presumably that "Makefile" was generated by CMake.  Can we just call the
top-level walk() for src, include, and tutorials?  Or better yet, use
exactly the directories that are listed in DIRS, just like gmakegen.
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