[petsc-dev] Superlu_dist error

Jose David Bermeol jbermeol at purdue.edu
Sat Oct 5 22:49:41 CDT 2013


Hi I'm runnig petsc trying to solve a linear system with superlu_dist. However i have a memory violation, atached is the code, and here is the output. Email me if you need something else to figured out what is happening.

Thanks

mpiexec -n 2 ./test_solver -mat_superlu_dist_statprint -mat_superlu_dist_matinput distributed
	Nonzeros in L       10
	Nonzeros in U       10
	nonzeros in L+U     10
	nonzeros in LSUB    10
	NUMfact space (MB) sum(procs):  L\U	0.00	all	0.03
	Total highmark (MB):  All	0.03	Avg	0.02	Max	0.02
        Mat conversion(PETSc->SuperLU_DIST) time (max/min/avg): 
                              0.000146866 / 0.000145912 / 0.000146389
	EQUIL time             0.00
	ROWPERM time           0.00
	COLPERM time           0.00
	SYMBFACT time          0.00
	DISTRIBUTE time        0.00
	FACTOR time            0.00
	Factor flops	1.000000e+02	Mflops 	    0.31
	SOLVE time             0.00
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: [1]PETSC ERROR: ------------------------------------------------------------------------
[1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
Try option -start_in_debugger or -on_error_attach_debugger
[1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[1]PETSC ERROR: likely location of problem given in stack below
[1]PETSC ERROR: ---------------------  Stack Frames ------------------------------------
[1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR: ---------------------  Stack Frames ------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR: [1]PETSC ERROR:       INSTEAD the line number of the start of the function
[1]PETSC ERROR:       is given.
[1]PETSC ERROR: [1] SuperLU_DIST:pzgssvx line 234 /home/jbermeol/Nemo5/libs/petsc/build-cplx/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
[1]PETSC ERROR: [1] MatMatSolve_SuperLU_DIST line 198 /home/jbermeol/Nemo5/libs/petsc/build-cplx/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
[1]PETSC ERROR:       INSTEAD the line number of the start of the function
[0]PETSC ERROR:       is given.
[0]PETSC ERROR: [0] SuperLU_DIST:pzgssvx line 234 /home/jbermeol/Nemo5/libs/petsc/build-cplx/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
[0]PETSC ERROR: [1] MatMatSolve line 3207 /home/jbermeol/Nemo5/libs/petsc/build-cplx/src/mat/interface/matrix.c
[1]PETSC ERROR: --------------------- Error Message ------------------------------------
[1]PETSC ERROR: [0] MatMatSolve_SuperLU_DIST line 198 /home/jbermeol/Nemo5/libs/petsc/build-cplx/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
[0]PETSC ERROR: [0] MatMatSolve line 3207 /home/jbermeol/Nemo5/libs/petsc/build-cplx/src/mat/interface/matrix.c
Signal received!
[1]PETSC ERROR: ------------------------------------------------------------------------
[1]PETSC ERROR: Petsc Release Version 3.4.2, Jul, 02, 2013 
[1]PETSC ERROR: See docs/changes/index.html for recent updates.
[1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[1]PETSC ERROR: See docs/index.html for manual pages.
[1]PETSC ERROR: ------------------------------------------------------------------------
[1]PETSC ERROR: ./test_solver on a linux-complex named carter-fe02.rcac.purdue.edu by jbermeol Sat Oct  5 23:45:21 2013
[1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Libraries linked from /home/jbermeol/Nemo5/libs/petsc/build-cplx/linux-complex/lib
[1]PETSC ERROR: Configure run at Sat Oct  5 11:19:36 2013
[1]PETSC ERROR: Configure options --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=1 --with-pic=1 --with-clanguage=C++ --with-fortran=1 --with-fortran-kernels=0 --with-blas-lapack-dir=/apps/rhel6/intel/composer_xe_2013.3.163/mkl --with-blacs-lib=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so --with-blacs-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include --with-scalapack-lib="-L/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64" --with-scalapack-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include --with-valgrind-dir=/apps/rhel6/valgrind/3.8.1 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3 --with-mkl-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include --with-mkl-lib="[/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_intel_lp64.so,/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_intel_thread.so,/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_core.so,/apps/rhel6/intel/composer_xe_2013.3.163/mkl/../compiler/lib/intel64/libiomp5.so]" --with-cpardiso-dir=/home/jbermeol/testPetscSolvers/intel_mkl_cpardiso --with-hdf5 --download-hdf5=yes --download-metis=yes --download-parmetis=yes --download-superlu_dist=yes --download-superlu=yes --download-mumps=yes --download-spooles=yes --download-pastix=yes --download-ptscotch=yes --download-umfpack=yes --download-sowing
Signal received!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.4.2, Jul, 02, 2013 
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: [1]PETSC ERROR: ------------------------------------------------------------------------
[1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./test_solver on a linux-complex named carter-fe02.rcac.purdue.edu by jbermeol Sat Oct  5 23:45:21 2013
[0]PETSC ERROR: Libraries linked from /home/jbermeol/Nemo5/libs/petsc/build-cplx/linux-complex/lib
[0]PETSC ERROR: Configure run at Sat Oct  5 11:19:36 2013
[0]PETSC ERROR: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
Configure options --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=1 --with-pic=1 --with-clanguage=C++ --with-fortran=1 --with-fortran-kernels=0 --with-blas-lapack-dir=/apps/rhel6/intel/composer_xe_2013.3.163/mkl --with-blacs-lib=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so --with-blacs-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include --with-scalapack-lib="-L/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64" --with-scalapack-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include --with-valgrind-dir=/apps/rhel6/valgrind/3.8.1 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3 --with-mkl-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include --with-mkl-lib="[/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_intel_lp64.so,/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_intel_thread.so,/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_core.so,/apps/rhel6/intel/composer_xe_2013.3.163/mkl/../compiler/lib/intel64/libiomp5.so]" --with-cpardiso-dir=/home/jbermeol/testPetscSolvers/intel_mkl_cpardiso --with-hdf5 --download-hdf5=yes --download-metis=yes --download-parmetis=yes --download-superlu_dist=yes --download-superlu=yes --download-mumps=yes --download-spooles=yes --download-pastix=yes --download-ptscotch=yes --download-umfpack=yes --download-sowing
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
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