[petsc-dev] Understanding Some Parallel Results with PETSc

Thu Feb 23 13:49:36 CST 2012

Hi Matt,

Attached are the log files for the two runs.

Thanks,

Dave

________________________________
From: petsc-dev-bounces at mcs.anl.gov [petsc-dev-bounces at mcs.anl.gov] on behalf of Matthew Knepley [knepley at gmail.com]
Sent: Thursday, February 23, 2012 11:17 AM
To: For users of the development version of PETSc
Subject: Re: [petsc-dev] Understanding Some Parallel Results with PETSc

On Thu, Feb 23, 2012 at 11:06 AM, Nystrom, William D <wdn at lanl.gov<mailto:wdn at lanl.gov>> wrote:
I recently ran a couple of test runs with petsc-dev that I do not understand.  I'm running on a test bed
machine that has 4 nodes with two Tesla 2090 gpus per node.  Each node is dual socket and populated
with Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz processors.  These are 8 core processors and so each
node has 16 cores.  On the gpu, I'm running with Paul's latest version of the txpetscgpu package.  I'm
running the src/ksp/ksp/examples/tutorials/ex2.c petsc example with m=n=10000.  My objective was
to compare the performance running on 4 nodes using all 8 gpus to that of running on the same 4 nodes
with all 64 cores.  This problem uses about a third of the memory available on the gpus.  I was using cg
with jacobi preconditioning on both the gpu run and the cpu run.  What is puzzling to me is that the cpu
case ran 44x times slower than the gpu case and the big difference was in the time spend in functions
like VecTDot, VecNorm and VecAXPY.

Below is a table that summarizes the performance of the main functions that were using time in the
two runs.  Times are in seconds.

                |      GPU      |      CPU     |    Ratio
-------------------------------------------------------------------------
MatMult     |     450.64    |     5484.7    |     12.17
-------------------------------------------------------------------------
VecTDot    |     285.35    |   16688.0    |     58.48
-------------------------------------------------------------------------
VecNorm   |       19.03    |     9058.8    |   476.03
-------------------------------------------------------------------------
VecAXPY  |     106.88    |     5636.3    |     52.73
-------------------------------------------------------------------------
VecAYPX  |       53.69    |        85.1    |       1.58
-------------------------------------------------------------------------
KSPSolve  |     811.95    |   35930.0    |     44.25
-------------------------------------------------------------------------

The ratio of MatMult for CPU versus GPU is what I typically see when I am comparing a CPU run on
a single core versus a run on a single GPU.  Since both runs are communicating across node via mpi,
I'm puzzled about why the CPU case is so much slower than the GPU case especially since there is
communication for the MatMult as well.  Both runs compute the same final error norm using the exact
same number of iterations.  Do these results make sense to people who understand the performance
issues of parallel sparse linear solvers much better than I?  Or do these results look abnormal.  I had
wondered if part of the performance issue was related to my running 8 times as many mpi processes
for the CPU case.  However, I ran a smaller problem with m=n=1000 and using 8 mpi processes and
2 cores per node and I see the same extreme differences in the times spent in VecTDot, VecNorm
and VecAXPY.

Here are the command lines I used for the two runs:

CPU:

mpirun -np 64 -mca btl self,sm,openib ex2 -m 10000 -n 10000 -ksp_type cg -ksp_max_it 100000 -pc_type jacobi -log_summary -options_left

GPU:

mpirun -np 8 -npernode 2 -mca btl self,sm,openib ex2 -m 10000 -n 10000 -ksp_type cg -ksp_max_it 100000 -pc_type jacobi -log_summary -options_left -mat_type aijcusp -vec_type cusp -cusp_storage_format dia

1) Always send -log_summary with performance questions

2) Comparing two things will not make any sense beyond "one ran faster" without a model for execution time

3) In order to make sense of my model, I need flop rates for those events

   Matt

Thanks,

Dave

--
Dave Nystrom
LANL HPC-5
Phone: 505-667-7913<tel:505-667-7913>
Email: wdn at lanl.gov<mailto:wdn at lanl.gov>
Smail: Mail Stop B272
      Group HPC-5
      Los Alamos National Laboratory
      Los Alamos, NM 87545

--
What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
-- Norbert Wiener
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