[petsc-dev] cmake problem

[Barry Smith]

  Jed,

  Please see the error below. What is the approved way to recover from something incomprehensible to me like this? Shouldn't a reconfigure clean up all possible dangers?

    Thanks

   Barry



barry-smiths-macbook-pro:petsc-dev barrysmith$ ./arch-gnu/conf/reconfigure-arch-gnu.py
===============================================================================
             Configuring PETSc to compile on your system                       
===============================================================================
TESTING: alternateConfigureLibrary from PETSc.packages.mpi4py(config/PETSc/packages/mpi4py.py:49)                       Compilers:
  C Compiler:         /Users/barrysmith/Src/petsc-dev/arch-gnu/bin/mpicc  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 
  CUDA Compiler:      nvcc  -g 
  Fortran Compiler:   /Users/barrysmith/Src/petsc-dev/arch-gnu/bin/mpif90   -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g 
Linkers:
  Static linker:   /usr/bin/ar cr
  Dynamic linker:   /Users/barrysmith/Src/petsc-dev/arch-gnu/bin/mpicc  -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3
MPI:
  Includes: -I/Users/barrysmith/Src/petsc-dev/arch-gnu/include
X11:
  Includes: 
  Library:  -L/usr/X11R6/lib -lX11
BLAS/LAPACK: -llapack -lblas
c2html:
pthread:
sowing:
valgrind:
  Includes: -I/opt/local/include
PETSc:
  PETSC_ARCH: arch-gnu
  PETSC_DIR: /Users/barrysmith/Src/petsc-dev
  Clanguage: C
  Scalar type: real
  Precision: double
  Memory alignment: 16
  shared libraries: disabled
  dynamic loading: disabled
xxx=========================================================================xxx
 Configure stage complete. Now build PETSc libraries with (legacy build):
   make PETSC_DIR=/Users/barrysmith/Src/petsc-dev PETSC_ARCH=arch-gnu all
 or (experimental with python):
   PETSC_DIR=/Users/barrysmith/Src/petsc-dev PETSC_ARCH=arch-gnu ./config/builder.py
xxx=========================================================================xxx
barry-smiths-macbook-pro:petsc-dev barrysmith$ make cmake
make -j 2 -C /Users/barrysmith/Src/petsc-dev/arch-gnu
Scanning dependencies of target petsc
Error copying Fortran module "include/petscsys".  Tried "include/PETSCSYS.mod" and "include/petscsys.mod".
make[4]: *** [CMakeFiles/petsc.dir/src/sys/f90-mod/petscsysmod.F.o.provides.build] Error 1
make[3]: *** [CMakeFiles/petsc.dir/src/sys/f90-mod/petscsysmod.F.o.provides] Error 2
make[2]: *** [CMakeFiles/petsc.dir/all] Error 2
make[1]: *** [all] Error 2
make: *** [cmake] Error 2