[petsc-dev] metis config error on XT4

Wed Nov 30 17:30:18 CST 2011

What version of cmake are you using?

I had a similar problem for metis 5.0.1: I got metis compiled by using
version of cmake 2.6 which is older than the requested one by dropping the
request in Cmakelists

2011/12/1 Jack Poulson <jack.poulson at gmail.com>

> I'm not too surprised; I haven't looked at how ParMETIS is being used
> within PETSc. The problem is definitely that ParMETIS isn't properly
> locating its GKlib subproject, and I think that the issue is in the lines I
> pointed out, but I'm not sure as to what the appropriate replacement for
> i"${CMAKE_CURRENT_SOURCE_DIR}" isin your situation.
>
> Jack
>
>
> On Wed, Nov 30, 2011 at 5:18 PM, Mark F. Adams <mark.adams at columbia.edu>wrote:
>
>> This did not seem to help.
>> Mark
>>
>> On Nov 30, 2011, at 5:35 PM, Jack Poulson wrote:
>>
>> I have actually run into a similar problem with ParMetis. I fixed it on
>> my end by changing the ParMetis CMakeLists.txt lines
>>
>> set(GKLIB_PATH METIS/GKlib CACHE PATH "path to GKlib")
>>  set(METIS_PATH METIS CACHE PATH "path to METIS")
>>
>> to
>>
>> set(GKLIB_PATH ${CMAKE_CURRENT_SOURCE_DIR}/metis/GKlib CACHE PATH "path
>> to GKlib
>> ")
>> set(METIS_PATH ${CMAKE_CURRENT_SOURCE_DIR}/metis CACHE PATH "path to
>> METIS")
>>
>> Your mileage may vary.
>>
>> Jack
>>
>> On Wed, Nov 30, 2011 at 4:32 PM, Aron Ahmadia <aron.ahmadia at kaust.edu.sa>wrote:
>>
>>> Mark,
>>>
>>> Sorry, no help here, except that cmake is pretty easy to install from
>>> source, so that might be my recommendation if you don't want to wait for
>>> help from their systems team.
>>>
>>> A
>>>
>>> On Thu, Dec 1, 2011 at 1:30 AM, Mark F. Adams <mark.adams at columbia.edu>wrote:
>>>
>>>> Thanks Tim, I do use gcc. And this is on Franklin at NERSC.
>>>>
>>>> Cmake is just kicking my ass, now I get (appended).
>>>>
>>>> I do have an old version of cmake here:
>>>>
>>>> madams/petsc-dev> which cmake
>>>> /usr/common/usg/cmake/2.8.3/bin/cmake
>>>>
>>>> any ideas?
>>>> Mark
>>>>
>>>> ===============================================================================
>>>>                                           Configuring METIS; this may take
>>>> several minutes
>>>>  ===============================================================================
>>>>
>>>>
>>>> *******************************************************************************
>>>>           UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
>>>> for details):
>>>>
>>>> -------------------------------------------------------------------------------
>>>> Error running configure on METIS: Could not execute "cd
>>>> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make
>>>> distclean && make config
>>>> prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc"
>>>> doubleprecision=1":
>>>> rm -rf build/Linux-x86_64
>>>> rm -rf build/Linux-x86_64
>>>> mkdir -p build/Linux-x86_64
>>>> cd build/Linux-x86_64 && cmake
>>>> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2
>>>> -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH=
>>>> -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt
>>>> -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1
>>>> -- The C compiler identification is GNU
>>>> -- The CXX compiler identification is GNU
>>>> -- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc
>>>> -- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc --
>>>> works
>>>> -- Detecting C compiler ABI info
>>>> -- Detecting C compiler ABI info - done
>>>> -- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++
>>>> -- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++ -- works
>>>> -- Detecting CXX compiler ABI info
>>>> -- Detecting CXX compiler ABI info - done
>>>> -- Configuring incomplete, errors occurred!
>>>> CMake Error at CMakeLists.txt:21 (include):
>>>>   include could not find load file:
>>>>
>>>>     /GKlibSystem.cmake
>>>>
>>>>
>>>> make: *** [config] Error 1
>>>>
>>>>
>>>>
>>>> On Nov 30, 2011, at 4:00 PM, Tim Gallagher wrote:
>>>>
>>>> Without knowing how your system is configured, this may not help. But
>>>> on the Cray systems we use (they have the modules package installed), if we
>>>> are using a compiler other than GNU (Intel, PGI, etc) but we want to use
>>>> cmake, we still have to load the gcc module (not the programming
>>>> environment, just the module).
>>>>
>>>> On our machines, it means we may load the PrgEnv-Intel module (so cc
>>>> points to icc, ftn points to ifort, etc) but we also have to load
>>>> gcc/<version> to get cmake to work.
>>>>
>>>> Tim
>>>>
>>>> ------------------------------
>>>> *From: *"Aron Ahmadia" <aron.ahmadia at kaust.edu.sa>
>>>> *To: *"For users of the development version of PETSc" <
>>>> petsc-dev at mcs.anl.gov>
>>>> *Sent: *Wednesday, November 30, 2011 3:49:25 PM
>>>> *Subject: *Re: [petsc-dev] metis config error on XT4
>>>>
>>>> looks like a broken cmake...
>>>>
>>>> What happens when you just run: cmake by itself?
>>>>
>>>> A
>>>>
>>>> On Wed, Nov 30, 2011 at 11:47 PM, Mark F. Adams <
>>>> mark.adams at columbia.edu> wrote:
>>>>
>>>>> I'm getting this error on Franklin at NERSC:
>>>>>
>>>>>
>>>>> *******************************************************************************
>>>>>         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
>>>>> for details):
>>>>>
>>>>> -------------------------------------------------------------------------------
>>>>> Error running configure on METIS: Could not execute "cd
>>>>> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make
>>>>> distclean && make config
>>>>> prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc"
>>>>> doubleprecision=1":
>>>>> rm -rf build/Linux-x86_64
>>>>> rm -rf build/Linux-x86_64
>>>>> mkdir -p build/Linux-x86_64
>>>>> cd build/Linux-x86_64 && cmake
>>>>> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2
>>>>> -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH=
>>>>> -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt
>>>>> -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1
>>>>> cmake: /opt/gcc/4.5.3/snos/lib64/libstdc++.so.6: version
>>>>> `GLIBCXX_3.4.15' not found (required by cmake)
>>>>> make: *** [config] Error 1
>>>>>
>>>>> *******************************************************************************
>>>>>
>>>>> any ideas?
>>>>>
>>>>> Mark
>>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>
>>
>>
>

-- 
Stefano
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