[petsc-dev] Bug in example code

Tim Gallagher tim.gallagher at gatech.edu
Wed Nov 23 12:04:32 CST 2011


Hi, 

I just cloned the petsc-dev branch for the first time and built it with GCC with both release and debug options and the tests during make test worked fine. I then built it with Intel with release options and the tests worked. Then I compiled with debug options and one of the tests generates an error:

Possible error running Fortran example src/snes/examples/tutorials/ex5f with 1 MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
forrtl: severe (408): fort: (2): Subscript #1 of the array LX_V has value 15092 which is greater than the upper bound of 1

Image              PC                Routine            Line        Source             
libirc.so          00007F4245C589AA  Unknown               Unknown  Unknown
libirc.so          00007F4245C574A6  Unknown               Unknown  Unknown
libifcore.so.5     00007F4240A5B6FC  Unknown               Unknown  Unknown
libifcore.so.5     00007F42409CEDA2  Unknown               Unknown  Unknown
libifcore.so.5     00007F42409CF323  Unknown               Unknown  Unknown
ex5f               0000000000403F58  forminitialguess_         294  ex5f.F
ex5f               0000000000403719  MAIN__                    224  ex5f.F
ex5f               00000000004028AC  Unknown               Unknown  Unknown
libc.so.6          00007F42401AB23D  Unknown               Unknown  Unknown
ex5f               00000000004027A9  Unknown               Unknown  Unknown

I am using:

Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 12.1.1.256 Build 20111011
Copyright (C) 1985-2011 Intel Corporation.  All rights reserved.

and petsc was configured with:

./configure PETSC_ARCH=linux-intel-debug --prefix=/opt/petsc/intel/2011.sp1.1/debug --with-make-np=12 --with-clanguage=C++ --with-c-support=1--with-fortran-kernels=1 --with-shared-libraries=1--download-scalapack=yes --download-parmetis=yes --download-metis=yes --with-imagemagick=1 --download-sundials=yes --download-mpi4py=yes --download-petsc4py=yes --download-boost=yes --with-hdf5=1 --with-hdf5-dir=$HDF5_DIR --with-imagemagick=0 --with-shared-libraries --with-debugging=no COPTFLAGS='-g -C -traceback -fpe0 -check noarg_temp_created -fp-stack-check -check uninit' FOPTFLAGS='-g -C -traceback -fpe0 -check noarg_temp_created -fp-stack-check -check uninit'

I am going to try looking for the problem, but since this is the first 10 minutes I've looked at the code, it will probably take me a lot longer than somebody else to find the problem. Let me know if there's anything I can do to help track down the problem. 

Thanks,

Tim



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