[petsc-dev] error with build

[Srinath Vadlamani]

It seems now that petsc4py must be built during a petsc configure/build.  Is
this correct?  I was hoping to install petsc4py in the same location as my
other python builds, so that I only have to specify one location in my
PYTHONPATH.

<>Srinath

On Mon, Nov 15, 2010 at 2:11 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:

>
>   There (sadly) is not completely automatic way to do this. Cd to
> $PETSC_DIR/externalpackages; remove any petsc4py* directories from there;
> clone petsc4py-dev into that directory. cd back to $PETSC_DIR; now run
> ./configure --download-petsc4py
>
>   It will not go and get a copy of petsc4py since the petsc4py-dev
> directory exists, rather it will use the one you have put there (by your
> clone).
>
>   Note that petsc4py-dev may not always have been updated to the latest
> changes to petsc-dev, if you get errors in the build report them to
> petsc-maint at mcs.anl.gov and we'll update the petsc4py-dev; note that after
> an update of petsc4py-dev you should cd externalpackages/petsc4py-dev and hg
> pull; hg update to get the latest.
>
>  Yes, someone should add proper support for ./configure to handle hg
> repositories from petsc-dev and do the pulls and updates automatically but
> that code has not been written, hence the manual process.
>
>   Barry
>
>
> On Nov 15, 2010, at 3:00 PM, Srinath Vadlamani wrote:
>
> > How does one configure petsc-dev to build petsc4py-dev?
> > I cloned petsc4py-dev but it needs my petsc-dev complex install to have
> petsc4py symbols?
> >
> > <>Srinath
> >
> > 2010/11/15 Satish Balay <balay at mcs.anl.gov>
> > [original e-mail didnt make it to the list due to the attached
> > configure.log. Huge attachments are prohibited on the mailing lists]
> >
> >
> > Using configure Options: --with-petsc-arch=real-par-debug
> --with-scalar-type=real --with-debugging=yes --with-debugger=totalview
> --download-superlu_dist=1 --download-mumps=1 --download-spooles=1
> --with-shared=1 --download-blacs=1 --download-parmetis=1 --download-szip=1
> --download-scalapack=1 --download-petsc4py --download-mpi4py
> --with-shared-libraries -prefix=/Users/srinath/software/petsc-dev-real-par
> >
> >
> > petsc4py listed in petsc4py.py is
> > http://petsc4py.googlecode.com/files/petsc4py-1.1.1.tar.gz Perhaps you
> > have to use petsc-4py-dev directly to get this working?
> >
> > Lisandro will know..
> >
> > Satish
> >
> > On Mon, 15 Nov 2010, Srinath Vadlamani wrote:
> >
> > > In file included from src/PETSc.c:3:
> > > src/petsc4py.PETSc.c: In function
> > > ‘__pyx_pf_8petsc4py_5PETSc_2IS_getBlockSize’:
> > > src/petsc4py.PETSc.c:49179: warning: implicit declaration of function
> > > ‘ISBlock’
> > > src/petsc4py.PETSc.c: In function
> ‘__pyx_pf_8petsc4py_5PETSc_2IS_getInfo’:
> > > src/petsc4py.PETSc.c:51132: warning: implicit declaration of function
> > > ‘ISStride’
> > > src/petsc4py.PETSc.c: In function
> ‘__pyx_pf_8petsc4py_5PETSc_3Mat_zeroRows’:
> > > src/petsc4py.PETSc.c:75725: error: too few arguments to function
> > > ‘MatZeroRowsIS’
> > > src/petsc4py.PETSc.c:75750: error: too few arguments to function
> > > ‘MatZeroRows’
> > > src/petsc4py.PETSc.c: In function
> > > ‘__pyx_pf_8petsc4py_5PETSc_3Mat_zeroRowsLocal’:
> > > src/petsc4py.PETSc.c:75872: error: too few arguments to function
> > > ‘MatZeroRowsLocalIS’
> > > src/petsc4py.PETSc.c:75897: error: too few arguments to function
> > > ‘MatZeroRowsLocal’
> > > src/petsc4py.PETSc.c: In function
> > > ‘__pyx_pf_8petsc4py_5PETSc_3KSP_setConvergenceTest’:
> > > src/petsc4py.PETSc.c:87471: error: ‘KSP_NORM_NO’ undeclared (first use
> in
> > > this function)
> > > src/petsc4py.PETSc.c:87471: error: (Each undeclared identifier is
> reported
> > > only once
> > > src/petsc4py.PETSc.c:87471: error: for each function it appears in.)
> > > src/petsc4py.PETSc.c: In function
> > > ‘__pyx_pf_8petsc4py_5PETSc_3KSP_getNormType’:
> > > src/petsc4py.PETSc.c:88847: error: ‘KSP_NORM_NO’ undeclared (first use
> in
> > > this function)
> > > src/petsc4py.PETSc.c: In function ‘initPETSc’:
> > > src/petsc4py.PETSc.c:131697: error: ‘KSP_NORM_NO’ undeclared (first use
> in
> > > this function)
> > > error: command 'mpicc' failed with exit status 1
> > > make[1]: *** [petsc4py] Error 1
> > >
> > >
> > >
> > >
> >
> >
> >
> > --
> > =========================
> > Srinath Vadlamani, PhD.
> > Tech-X Corp. Research Scientist
> > 5621 Arapahoe Ave. Suite A
> > Boulder, CO 80303
> > 303-996-2034
> > =========================
> >
>
>
>


-- 
=========================
Srinath Vadlamani, PhD.
Tech-X Corp. Research Scientist
5621 Arapahoe Ave. Suite A
Boulder, CO 80303
303-996-2034
=========================
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