[petsc-dev] Error building the latest PETSc

[Barry Smith]

  hg pull; hg update; cd src/sys/viewer/impls/hdf5; make 

   Barry

Someone's incomplete and untested cut and paste snuck into the repository

On Nov 3, 2010, at 8:55 PM, Carl Ponder wrote:

> 
> Satish, Jed -- I'm not sure the message got through -- here's the info without the log files:
> 
> 
> On 11/03/2010 06:50 PM, Satish Balay wrote:
>> I think I understand the issue. I'm pushing something that should fix it.
>> [so here - you have to do 'hg pull -u' to get this fix and rerun configure]
>> 
>> Jed,
>> 
>> The issue is: PETSc is built without a c++ compiler, but SAMRAI - is using it with c++ - hence the error [with missing PETSC_FUNCTION_NAME_CXX]. So I think we'll have to always set PETSC_FUNCTION_NAME_CXX irrespective of c++ usage in petsc.
>> Perhaps you might want to cleanup my fix..
>> 
> 
> Satish, Jed -- thanks for the fix -- I think we're almost there.
> Here is an error I get from installing the latest petsc-dev:
>> libfast in: /home/cponder/CUDA/PFlotran/petsc-dev/src/sys/viewer/impls/hdf5
>> hdf5v.c:298: error: conflicting types for ‘PetscViewerHDF5GetTimestep’
>> /home/cponder/CUDA/PFlotran/petsc-dev/include/petscviewer.h:286: note: previous declaration of ‘PetscViewerHDF5GetTimestep’ was here
>> /usr/bin/ar: hdf5v.o: No such file or directory
>>               ...
>> ********************************************************************
>>   Error during compile, check arch-linux-gnu-c-debug/conf/make.log
>>   Send it and arch-linux-gnu-c-debug/conf/configure.log to petsc-maint at mcs.anl.gov
>> ********************************************************************
>> make: [all] Error 1 (ignored)
> For the record, here are the commands I used to install:
>> hg clone http://petsc.cs.iit.edu/petsc/petsc-dev
>> cd petsc-dev/config
>> hg clone http://petsc.cs.iit.edu/petsc/BuildSystem
>> cd ..
>> export PETSC_ARCH=arch-linux-gnu-c-debug
>> export PETSC_DIR=$PWD
>> ./configure --with-cc=mpicc --with-fc=mpif90 --download-f-blas-lapack=1 --download-hdf5=1 --prefix=$PETSC_DIR/$PETSC_ARCH
>> make PETSC_DIR=$PWD PETSC_ARCH=arch-linux-gnu-c-debug all
>> make PETSC_DIR=$PWD PETSC_ARCH=arch-linux-gnu-c-debug install
>> cd ..
> I'm not sending it to the petsc-maint list yet, in case you can figure out the fix right away.
> Thanks,
> 
>             Carl Ponder, Ph.D.
>             NVidia
> 
> 
> 
> 
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