Did someone fucking break bfort?

Matthew Knepley knepley at gmail.com
Mon Dec 21 14:29:44 CST 2009


I killed my directory, removed sowing from extpacks, and reran configure,
but I get

                               TESTING: checkSharedLibrary from
PETSc.packages.sowing(config/BuildSystem/config/package.py:423)
*** stack smashing detected ***:
/PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort terminated
======= Backtrace: =========
/lib/tls/i686/cmov/libc.so.6(__fortify_fail+0x48)[0xb7daf138]
/lib/tls/i686/cmov/libc.so.6(__fortify_fail+0x0)[0xb7daf0f0]
/PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x8052504]
/PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x804a686]
/PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x804a0b3]
/lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0)[0xb7cd8450]
/PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x80490b1]
======= Memory map: ========
08048000-08054000 r-xp 00000000 08:06 5030686
/PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort
08054000-08055000 rw-p 0000c000 08:06 5030686
/PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort
08055000-08077000 rw-p 08055000 00:00 0          [heap]
b7cc1000-b7cc2000 rw-p b7cc1000 00:00 0
b7cc2000-b7e0b000 r-xp 00000000 08:06 2352482    /lib/tls/i686/cmov/
libc-2.7.so
b7e0b000-b7e0c000 r--p 00149000 08:06 2352482    /lib/tls/i686/cmov/
libc-2.7.so
b7e0c000-b7e0e000 rw-p 0014a000 08:06 2352482    /lib/tls/i686/cmov/
libc-2.7.so
b7e0e000-b7e11000 rw-p b7e0e000 00:00 0
b7e11000-b7e18000 r-xp 00000000 08:06 2352512    /lib/tls/i686/cmov/
librt-2.7.so
b7e18000-b7e1a000 rw-p 00006000 08:06 2352512    /lib/tls/i686/cmov/
librt-2.7.so
b7e1a000-b7e1b000 rw-p b7e1a000 00:00 0
b7e1b000-b7e2f000 r-xp 00000000 08:06 2352508    /lib/tls/i686/cmov/
libpthread-2.7.so
b7e2f000-b7e31000 rw-p 00013000 08:06 2352508    /lib/tls/i686/cmov/
libpthread-2.7.so
b7e31000-b7e33000 rw-p b7e31000 00:00 0
b7e38000-b7e42000 r-xp 00000000 08:06 2334868    /lib/libgcc_s.so.1
b7e42000-b7e43000 rw-p 0000a000 08:06 2334868    /lib/libgcc_s.so.1
b7e43000-b7e46000 rw-p b7e43000 00:00 0
b7e46000-b7f04000 r-xp 00000000 08:06 5030650
/PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/lib/libmpich.so.1.1
b7f04000-b7f07000 rw-p 000bd000 08:06 5030650
/PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/lib/libmpich.so.1.1
b7f07000-b7f29000 rw-p b7f07000 00:00 0
b7f29000-b7f2a000 r-xp b7f29000 00:00 0          [vdso]
b7f2a000-b7f44000 r-xp 00000000 08:06 2335045    /lib/ld-2.7.so
b7f44000-b7f46000 rw-p 00019000 08:06 2335045    /lib/ld-2.7.so
bfb51000-bfb66000 rw-p bffeb000 00:00 0          [stack]
*********************************************************************************
         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
details):
---------------------------------------------------------------------------------------
*******Error generating Fortran stubs: Error running bfort Aborted*******
*********************************************************************************

   Matt

-- 
What most experimenters take for granted before they begin their experiments
is infinitely more interesting than any results to which their experiments
lead.
-- Norbert Wiener
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