[Parvis-users] [EXTERNAL] Re: ParNCL build problems

Peterson, Kara J. kjpeter at sandia.gov
Tue Nov 25 12:45:57 CST 2014 

Hi,

After looking at the make output it appears that there are undefined
references to Teuchos functions. Teuchos is a part of Trilinos that is a
backbone for many basic computations. If Trilinos is configured to build
Intrepid,Teuchos should build automatically because it is a necessary
dependency. Can you check the configure and make output for Trilinos?

Best,
Kara 

On 11/25/14, 10:57 AM, "Krishna, Jayesh" <jayesh at mcs.anl.gov> wrote:

>Hi,
> Which version of Trilinos are you using?
> As we are debugging this issue can you try an older version of Trilinos,
>11.0.3 or 10.6.4, and see if it works for you?
>
>Regards,
>Jayesh
>________________________________________
>From: parvis-users-bounces at lists.mcs.anl.gov
>[parvis-users-bounces at lists.mcs.anl.gov] on behalf of Krishna, Jayesh
>[jayesh at mcs.anl.gov]
>Sent: Tuesday, November 25, 2014 8:59 AM
>To: Aditya Support
>Cc: parvis-users at lists.mcs.anl.gov
>Subject: Re: [Parvis-users] ParNCL build problems
>
>Hi,
> After a closer look at the make output, it looks like parncl was not
>built correctly. There are many undefined references to Intrepid
>functions. I will ping you soon with my findings.
>
>Regards,
>Jayesh
>________________________________________
>From: Aditya Support [adityasupport at tropmet.res.in]
>Sent: Tuesday, November 25, 2014 6:53 AM
>To: Krishna, Jayesh
>Cc: parvis-users at lists.mcs.anl.gov
>Subject: Re: ParNCL build problems
>
>Hi Jayesh,
>
>Also find the below command output:
>
>--------------------------------------------------------------------------
>------------------------------------------
>iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ file
>parncl
>parncl: data
>--------------------------------------------------------------------------
>------------------------------------------
>
>'parncl' is a data file. Please let me know whether it is created
>correctly or not.
>
>Regards,
>Amit
>
>----- Original Message -----
>From: "Aditya Support" <adityasupport at tropmet.res.in>
>To: "Jayesh Krishna" <jayesh at mcs.anl.gov>
>Cc: parvis-users at lists.mcs.anl.gov
>Sent: Tuesday, November 25, 2014 6:13:07 PM
>Subject: Re: ParNCL build problems
>
>Hi Jayesh,
>
>Yes i am having permission to execute, you can check the below command
>examples:
>--------------------------------------------------------------------------
>------------------------------------------
>iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ls -l
>parncl
>-rwxr-xr-x 1 ibm lsfadmin 71304088 Nov 24 16:10 parncl
>iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ./parncl
>-bash: ./parncl: cannot execute binary file
>iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ id
>uid=502(ibm) gid=501(lsfadmin) groups=501(lsfadmin)
>iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $
>--------------------------------------------------------------------------
>------------------------------------------
>
>Regards,
>Amit
>
>----- Original Message -----
>From: "Jayesh Krishna" <jayesh at mcs.anl.gov>
>To: "Aditya Support" <adityasupport at tropmet.res.in>
>Cc: parvis-users at lists.mcs.anl.gov
>Sent: Tuesday, November 25, 2014 6:10:08 PM
>Subject: RE: ParNCL build problems
>
>Hi,
> Do you have permissions to execute the binary file? Are you cross
>compiling your code?
> I would recommend that you contact your system administrator to solve
>this issue. Please let us know the results.
>
>Regards,
>Jayesh
>________________________________________
>From: Aditya Support [adityasupport at tropmet.res.in]
>Sent: Monday, November 24, 2014 11:04 PM
>To: Krishna, Jayesh
>Subject: Re: ParNCL build problems
>
>Hi Jayesh,
>
>Thanks for the reply!!!
>Please find the below directory listing of
>/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin. Yes you are
>correct, parncl binary is created under bin directory. However, while
>executing the binary I am getting below error:
>
>--------------------------------------------------------------------------
>--------------------------------------------------------------------------
>-------------
>iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ls
>cgm2ncgm        findg    MakeNcl   ncargfile     ncarvversion    ng4ex
>pre2ncgm       ras2ccir601  rasview            wrapit77
>ConvertMapData  fontc    med       ncargpath     ncgm2cgm        nhlcc
>pre2ncgm.prog  rascat       scrip_check_input  WriteLineFile
>ctlib           gcaps    ncargcc   ncargrun      ncgmstat        nhlf77
>psblack        rasgetpal    tdpackdemo         WriteNameFile
>ctrans          graphc   ncargex   ncargversion  ncl_convert2nc  nhlf90
>psplit         rasls        tgks0a             WritePlotcharData
>ezmapdemo       ictrans  ncargf77  ncargworld    ncl_filedump    nnalg
>pswhite        rassplit     tlocal
>fcaps           idt      ncargf90  ncarlogo2ps   ncl_grib2nc     parncl
>pwritxnt       rasstat      WRAPIT
>iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ./parncl
>-bash: ./parncl: cannot execute binary file
>iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $
>--------------------------------------------------------------------------
>--------------------------------------------------------------------------
>-------------
>iitmlogin3:/gpfs3/home/iitmuser1/Bipin/ParNCL/parncl-1-0-0/example $
>mpirun -np 2 parncl plot_vort.ncl
>/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl:
>/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl: cannot
>execute binary file
>/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl:
>/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl: cannot
>execute binary file
>iitmlogin3:/gpfs3/home/iitmuser1/Bipin/ParNCL/parncl-1-0-0/example $
>--------------------------------------------------------------------------
>--------------------------------------------------------------------------
>-------------
>
>Regards,
>Amit
>
>----- Original Message -----
>From: "Jayesh Krishna" <jayesh at mcs.anl.gov>
>To: "Aditya Support" <adityasupport at tropmet.res.in>
>Sent: Monday, November 24, 2014 8:58:36 PM
>Subject: RE: ParNCL build problems
>
>Hi,
> From the log it looks like the parncl executable is built and installed
>correctly in /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin . Can
>you send us the directory listing of the above directory (ls
>/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin)?
> Please note that installing ParNCL does not add the bin directory to
>your PATH (You will need to set your path correctly to use parncl -
>"export PATH=/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin:$PATH")
>
>Regards,
>Jayesh
>________________________________________
>From: Aditya Support [adityasupport at tropmet.res.in]
>Sent: Monday, November 24, 2014 5:06 AM
>To: Krishna, Jayesh
>Subject: ParNCL build problems
>
>Hi Jayesh,
>
>I am building ParNCL on my RHEL 6.4 box. I referred below to build it
>from scratch:
>
>Link --> http://trac.mcs.anl.gov/projects/parvis/wiki/BuildingParNCL
>
>I am able to build all dependencies, but still not able to build 'parncl'
>binary. Please help me to correct this error and also find the attached
>logs.
>
>Regards,
>Amit
>_______________________________________________
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