[Parvis-users] ParNCL build problems

[Krishna, Jayesh]

Hi,
 After a closer look at the make output, it looks like parncl was not built correctly. There are many undefined references to Intrepid functions. I will ping you soon with my findings.

Regards,
Jayesh
________________________________________
From: Aditya Support [adityasupport at tropmet.res.in]
Sent: Tuesday, November 25, 2014 6:53 AM
To: Krishna, Jayesh
Cc: parvis-users at lists.mcs.anl.gov
Subject: Re: ParNCL build problems

Hi Jayesh,

Also find the below command output:

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iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ file parncl
parncl: data
--------------------------------------------------------------------------------------------------------------------

'parncl' is a data file. Please let me know whether it is created correctly or not.

Regards,
Amit

----- Original Message -----
From: "Aditya Support" <adityasupport at tropmet.res.in>
To: "Jayesh Krishna" <jayesh at mcs.anl.gov>
Cc: parvis-users at lists.mcs.anl.gov
Sent: Tuesday, November 25, 2014 6:13:07 PM
Subject: Re: ParNCL build problems

Hi Jayesh,

Yes i am having permission to execute, you can check the below command examples:
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iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ls -l parncl
-rwxr-xr-x 1 ibm lsfadmin 71304088 Nov 24 16:10 parncl
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ./parncl
-bash: ./parncl: cannot execute binary file
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ id
uid=502(ibm) gid=501(lsfadmin) groups=501(lsfadmin)
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $
--------------------------------------------------------------------------------------------------------------------

Regards,
Amit

----- Original Message -----
From: "Jayesh Krishna" <jayesh at mcs.anl.gov>
To: "Aditya Support" <adityasupport at tropmet.res.in>
Cc: parvis-users at lists.mcs.anl.gov
Sent: Tuesday, November 25, 2014 6:10:08 PM
Subject: RE: ParNCL build problems

Hi,
 Do you have permissions to execute the binary file? Are you cross compiling your code?
 I would recommend that you contact your system administrator to solve this issue. Please let us know the results.

Regards,
Jayesh
________________________________________
From: Aditya Support [adityasupport at tropmet.res.in]
Sent: Monday, November 24, 2014 11:04 PM
To: Krishna, Jayesh
Subject: Re: ParNCL build problems

Hi Jayesh,

Thanks for the reply!!!
Please find the below directory listing of /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin. Yes you are correct, parncl binary is created under bin directory. However, while executing the binary I am getting below error:

-----------------------------------------------------------------------------------------------------------------------------------------------------------------
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ls
cgm2ncgm        findg    MakeNcl   ncargfile     ncarvversion    ng4ex   pre2ncgm       ras2ccir601  rasview            wrapit77
ConvertMapData  fontc    med       ncargpath     ncgm2cgm        nhlcc   pre2ncgm.prog  rascat       scrip_check_input  WriteLineFile
ctlib           gcaps    ncargcc   ncargrun      ncgmstat        nhlf77  psblack        rasgetpal    tdpackdemo         WriteNameFile
ctrans          graphc   ncargex   ncargversion  ncl_convert2nc  nhlf90  psplit         rasls        tgks0a             WritePlotcharData
ezmapdemo       ictrans  ncargf77  ncargworld    ncl_filedump    nnalg   pswhite        rassplit     tlocal
fcaps           idt      ncargf90  ncarlogo2ps   ncl_grib2nc     parncl  pwritxnt       rasstat      WRAPIT
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ./parncl
-bash: ./parncl: cannot execute binary file
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
iitmlogin3:/gpfs3/home/iitmuser1/Bipin/ParNCL/parncl-1-0-0/example $ mpirun -np 2 parncl plot_vort.ncl
/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl: /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl: cannot execute binary file
/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl: /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl: cannot execute binary file
iitmlogin3:/gpfs3/home/iitmuser1/Bipin/ParNCL/parncl-1-0-0/example $
-----------------------------------------------------------------------------------------------------------------------------------------------------------------

Regards,
Amit

----- Original Message -----
From: "Jayesh Krishna" <jayesh at mcs.anl.gov>
To: "Aditya Support" <adityasupport at tropmet.res.in>
Sent: Monday, November 24, 2014 8:58:36 PM
Subject: RE: ParNCL build problems

Hi,
 From the log it looks like the parncl executable is built and installed correctly in /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin . Can you send us the directory listing of the above directory (ls /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin)?
 Please note that installing ParNCL does not add the bin directory to your PATH (You will need to set your path correctly to use parncl - "export PATH=/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin:$PATH")

Regards,
Jayesh
________________________________________
From: Aditya Support [adityasupport at tropmet.res.in]
Sent: Monday, November 24, 2014 5:06 AM
To: Krishna, Jayesh
Subject: ParNCL build problems

Hi Jayesh,

I am building ParNCL on my RHEL 6.4 box. I referred below to build it from scratch:

Link --> http://trac.mcs.anl.gov/projects/parvis/wiki/BuildingParNCL

I am able to build all dependencies, but still not able to build 'parncl' binary. Please help me to correct this error and also find the attached logs.

Regards,
Amit