From wkliao at northwestern.edu Thu Sep 12 17:09:58 2024 From: wkliao at northwestern.edu (Wei-Keng Liao) Date: Thu, 12 Sep 2024 22:09:58 +0000 Subject: PnetCDF-Python version 1.0.0 pre-release Message-ID: <9066C559-FB27-4C60-9658-14738DA54F86@northwestern.edu> An HTML attachment was scrubbed... URL: From phillip.yeh at stonybrook.edu Fri Sep 13 17:13:37 2024 From: phillip.yeh at stonybrook.edu (Phillip Yeh) Date: Fri, 13 Sep 2024 18:13:37 -0400 Subject: error installing parallel netcdf Message-ID: I was attempting to install pnetcdf on a university supercomputer, to eventually install MPAS. I was following the instructions in https://urldefense.us/v3/__https://github.com/Parallel-NetCDF/PnetCDF/blob/master/INSTALL__;!!G_uCfscf7eWS!aP2Bc-BxuHpjw6xtHK8YkEpjziXZ2ltSIoiQjphxjc4_Q44nZfiIL3z-JvDtrG_LM5U6ekSJ4yfCPl-s6VRubwnHThZhdmoCthX7$ and had reached step (e) before encountering the following error: /usr/bin/ld: cannot find -lnuma /usr/bin/ld: cannot find -ludev collect2: error: ld returned 1 exit status make[3]: Leaving directory '/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src/utils/ncmpigen' make[3]: *** [Makefile:570: ncmpigen] Error 1 make[2]: Leaving directory '/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src/utils' make[1]: Leaving directory '/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src' make[2]: *** [Makefile:557: all-recursive] Error 1 make[1]: *** [Makefile:487: all-recursive] Error 1 make: *** [Makefile:545: all-recursive] Error 1 As I am not very familiar with running and configuring *make*, I am not sure what to do next. I do have MPI and NetCDF already set up. Sincerely, Phillip Yeh -------------- next part -------------- An HTML attachment was scrubbed... URL: From robl at mcs.anl.gov Mon Sep 23 08:18:01 2024 From: robl at mcs.anl.gov (Latham, Robert J.) Date: Mon, 23 Sep 2024 13:18:01 +0000 Subject: error installing parallel netcdf In-Reply-To: References: Message-ID: Hi Phllip: sorry for the delay -- mailman held your message for moderation (as we do for all messages from non-subscribers) and I only noticed it today. Your compilation got pretty far along, then failed to build some of the utilities. Could you send me (just me, not the list) your 'config.log' and let's see if we can figure out what went wrong. Libraries like 'numa' and 'udev' aren't part of pnetcdf, so I'm curious what brought them in to your build. ==rob ________________________________________ From: parallel-netcdf on behalf of Phillip Yeh Sent: Friday, September 13, 2024 17:13 To: parallel-netcdf at mcs.anl.gov Subject: error installing parallel netcdf I was attempting to install pnetcdf on a university supercomputer, to eventually install MPAS. I was following the instructions in https:?//github.?com/Parallel-NetCDF/PnetCDF/blob/master/INSTALL and had reached step (e) before encountering the ZjQcmQRYFpfptBannerStart This Message Is From an External Sender This message came from outside your organization. ZjQcmQRYFpfptBannerEnd I was attempting to install pnetcdf on a university supercomputer, to eventually install MPAS. I was following the instructions in https://urldefense.us/v3/__https://github.com/Parallel-NetCDF/PnetCDF/blob/master/INSTALL__;!!G_uCfscf7eWS!c0psZfVpquNUGHOHYIGY0iZr6Ka2n4RMMTxrNhPG-xmMZ_H7lREbuQYrax38EiaTIHO7RXUjhgNWm8gZMX_NVVoZng$ and had reached step (e) before encountering the following error: /usr/bin/ld: cannot find -lnuma /usr/bin/ld: cannot find -ludev collect2: error: ld returned 1 exit status make[3]: Leaving directory '/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src/utils/ncmpigen' make[3]: *** [Makefile:570: ncmpigen] Error 1 make[2]: Leaving directory '/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src/utils' make[1]: Leaving directory '/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src' make[2]: *** [Makefile:557: all-recursive] Error 1 make[1]: *** [Makefile:487: all-recursive] Error 1 make: *** [Makefile:545: all-recursive] Error 1 As I am not very familiar with running and configuring make, I am not sure what to do next. I do have MPI and NetCDF already set up. Sincerely, Phillip Yeh